G329685


Basic Information

Item Value
gene id G329685
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9575389 ~ 9575704 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390569
ggattccctcgttgtgttgttgtttggaaggagtttccggcgatgttgattggtcggcggtctggttggccttatgtagcgtctcgaaagaccaatgaggaagataaacagagtgaggcgcgaacctggcggagtctcgtaggcgggttgcaaaactttgaagaGTGGTTCACAGCGGTGCGAAGCCGAGAGTTGGAAgctttgcaagaaccagtctggatgcagtctcggagcaagcgtgatctccttgtgatgaacttctaaagctcttggttgatgagacttccttcagatgtggatggagactgtcttgagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390569 True 316 lncRNA 0.51 1 9575389 9575704

Neighbor

gene id symbol gene type direction distance location
sycp2l sycp2l,LOC108261788 coding upstream 13200 9510608 ~ 9562189 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 124046 9438298 ~ 9451343 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding upstream 160007 9400242 ~ 9415382 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 225883 9333115 ~ 9349506 (+)
ofcc1 LOC108256210 coding upstream 387313 9082979 ~ 9188076 (+)
LOC113541200 dnajc13 coding downstream 607087 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 769619 10345323 ~ 10426436 (+)
lztfl1 lztfl1,LOC107701792 coding downstream 865253 10440957 ~ 10477542 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 973024 10548728 ~ 10552018 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding downstream 1234902 10810606 ~ 10828391 (+)
G329564 NA non-coding upstream 6717 9565693 ~ 9568672 (+)
G329581 NA non-coding upstream 83844 9491274 ~ 9491545 (+)
LOC117595781 NA non-coding upstream 92572 9472616 ~ 9482817 (+)
G329574 NA non-coding upstream 94836 9480339 ~ 9480553 (+)
G329522 NA non-coding upstream 222656 9352150 ~ 9352733 (+)
G329689 NA non-coding downstream 24904 9600608 ~ 9600840 (+)
LOC117595805 NA non-coding downstream 119955 9695659 ~ 9714739 (+)
G329697 NA non-coding downstream 143955 9719659 ~ 9723811 (+)
G329701 NA non-coding downstream 150853 9726557 ~ 9728572 (+)
G329699 NA non-coding downstream 155233 9730937 ~ 9731833 (+)
bmp6 bmp6 other upstream 652596 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 754078 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 909553 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 1025151 8388187 ~ 8550238 (+)
osr2 osr2,LOC106591507 other upstream 1196493 8372685 ~ 8378896 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other downstream 45975 9621679 ~ 9687491 (+)
G329779 NA other downstream 215980 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 280478 9856182 ~ 9938468 (+)
G330038 NA other downstream 855629 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 1019426 10595130 ~ 10768360 (+)

Expression


Co-expression Network