G329697


Basic Information

Item Value
gene id G329697
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9719659 ~ 9723811 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390583
tgctgctgccacatgatcggcggattggataactgcatgaatgtgcagatgtacaggtgttcctattaaagtggacagtgagtgtataacatcaggaacaccaaaaggccacggaagacaactaaagcgGATGGTCGccgaattctttccttgttgaagaaaaaccattcacaacatctagccaattCAAggacactctggaggaggtaggcatagCAAAGTCTATAATCAAgacttcatgaatgtaaatacagacagtttacctcaagatacAAACTACTGTTCAAGAACAGTAGTGTTCAAGAAActacactcaagaacagaaaggccagattagattttgctttaaaaaaaaaactgaacagttCTGATACAAGATtcacttgtaccagaatgatgggaagagaagagtatggaaaaggaaaggattcaaagaaaagaaattaaatgttcttaaatgtccacAGATTTCAGACTTCATGTAgttattgactgcaaaggatctGCATTCCttttaagtattaaaaataatcataatatttatgattatattaatatgtccaattacttttgtgtctgtgaaaatggagggactctgttatagaaaaaaaatggctgtaattcttaaacattaatgcaatatttttgttaacacCCAACAGAAATAGCAGCTGCACCACTACTCCCGGtgaatatatacaatatgtcgatatttacaaaaaaaaatacagcagtgTGACTATTTACAAACCTAGGCAGCAGACAATAACCAAGGGACAGATCAAGCTCACAGTCAGGATAGACACCGTTCGAAACCAGAAATACACAACAAAAGCACAGAATGGATTAACGAGTACAACCACAAATGCAATCGGGTGAGCACAGACAATTCAAAGCTGGGGGCATTGGTTTTCATCACTTCTAAATACTGTTGCCCATTGATGACATCATTCTGGGTCAGAAGTGGCAACACAAGGCTGATGAAGCAGCAGCTGAAGCAGAGTAGGAAGGCCCAGACGTTAGTCTGAAATGGACCAACCTGCAcagccatcatagcaaaactgtatcaattgcagtccgaagccatcttcatggtttctaagtggtaccatccacagtaatctcatgtatctttaggctgtccatatggggctatcctcagcagcagcaagtggtttccaagtgatgagaactccaatcAGAAGTAAGGCATCAGGCcagatcaggcaggtccagagagcagaaggggtcaggatcaatgatatctcaggagtagaatgtgtagctcgacagagagagagagagagaaagagagaaacacagattattaggtattcTTATTGTCAAGTAAtcgttaaggacaatgtacattgtgtgcaaaGTGCAAGCAAGGACTcaggcaagactagctatgacagcataacaaaagggagagccagaaagCAACACAGACACAAGGGTGCCTTGGGTCATAAaccagccagccactccaccttCAACAAACATGAGTGAACGTGGGAGACGCAACAGCATCCAAAAATCCCAGTTCACCACTCTATGCCCGTGAACCCTCTAGATCTGCTCCTTtgcctaagaaaaaactattcacaaaaggcttaactaaataaatgttttcagcctagacttaaacactgagactgtgtctgagtcccaaacactaattcTGGAGACAAATGCAGTGTGGATCAGATAGGGGTGATGtagtcatatcttctggttgtAGTAAGgattctcactgctgcattctggactagctggagcttgtttatgcacctagtggaacatccagacagtaaggcattacaatattccaacctagaggtaacaaacgcatgaactagtttttctgcatcatgttgTGACATTATATTTGTTACCttggcaatatttctgagatgaaagaaggctattctagtaatattatctacaagAGCtccaaatgaaagactggagtcaataatcacaccaaggtcttttactgctgcacttgatgaaaggccatccagagttactatgtagtcagaaagcttacttctaagtgtatgtggtcctagtacacgtacttcttgtcagaattaaatgTAGAAGGAAGTTACTAAGCATCCattgtctaatgtcctttacacattcctcaactttattaagctggttgtctctcatctggctttgctgaaacatacaactgtgtcaTCAACATAACattggaagctaataccatgtttacgaataattttatccagaggtagcatatataaagaaaaaagcagtgggcctaaaacagaactttgtggaacaccaaactttaccttagtatgcttagagaacgatcagtcaaataagacctgagccaggagagggccgttcccttaacttcaacaacattttctagtctatcaaggagaatagcatgatcgatggtgtcaaaagctgcactaagttcaagcaacacaagcaaggagacacagtCCTGATCAAAGACCAGTAGTacgtcatttaccactttaaccagtgctgtctgtgctatgatgaggcttaaatcctgactgatacatttcataaatgttattcctatgtggtatgagcataactgctttGCTACAACctttttctaggatcttggacaGCCGACAGAGGTGGAGGTCAGATTTTTTAATTCATGGATTTGATAACTACTAGTTTAGAAGATTTAcatacatagccagtgctaatggaagaactgattatttttagaagattGCTAATCTGATTGAAGAaccatgtaggtaagggatctagtacacaagttgatgattttgatgaggaaattagtgaaattagttcagtctctcgaAGGGGACTAAAAACATTCTAATTGCTGATctgatatagtgatatatagtgtgtgtatatattgtgtaacCTGTCTGCCTATTGGTATGTTTGTGTGAGGTGGGTGGAAACAGGAGAAACCAGACCAAACCCATGCAGACAAGGGGACATCATctgaaacttcacacagatgGTAAcgtgagctcaggatcaaatcagGGACCGTTATTGTGAGGCAGCAACCATCATCAGTGTGCGACAGACTTCTTTTAAGTCTGATGGTTTGTGAGTAACAGTGcacattttaaaccaaaattcCAATCTCTTTGGTGTCACGCCTATGTAGGTACCATTCATCCACAGATAGGGGGCGCACCATGACTAAAGTACTTTTACAGCAACCAGTAGTACattcacacaaaaatgaaaattgtgtcatcATTACTCACCCTCATATTGTTCCAAGCCTGTATGACCTACTTCTGTGAAATTGCTTTTTGTGCATGGCATGGATAAACCTCCGCTAAATTGACAATGTAGTTTTTGAAAgcattaaaacaattaattgaATTTTGATTTCATGAGCTCATCTGTAACGACGTGCTCGTACACGAAGCGTCGGACTCCTCCACTGGCTCGTTGAAACATGTGCTGCGGAAACTCTCGCGAGAGCGtatagcagcagcagcagctgctgcttcttcttcttcttcttcttcttcttcttcttcctcttcttctgttGTTTACTGGCGGTTGGCAAACAACTTATAGGTGCATTACCGCCACCTTCTGGAGTGGAGTGTGATCAGGATGGCTACC

Function

NR:

description
PREDICTED: alpha-mannosidase 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390583 True 3651 lncRNA 0.40 2 9719659 9723811

Neighbor

gene id symbol gene type direction distance location
sycp2l sycp2l,LOC108261788 coding upstream 157470 9510608 ~ 9562189 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 268316 9438298 ~ 9451343 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding upstream 304277 9400242 ~ 9415382 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 370153 9333115 ~ 9349506 (+)
ofcc1 LOC108256210 coding upstream 531583 9082979 ~ 9188076 (+)
LOC113541200 dnajc13 coding downstream 458980 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 621512 10345323 ~ 10426436 (+)
lztfl1 lztfl1,LOC107701792 coding downstream 717146 10440957 ~ 10477542 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 824917 10548728 ~ 10552018 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding downstream 1086795 10810606 ~ 10828391 (+)
LOC117595805 NA non-coding upstream 4920 9695659 ~ 9714739 (+)
G329689 NA non-coding upstream 118819 9600608 ~ 9600840 (+)
G329685 NA non-coding upstream 143955 9575389 ~ 9575704 (+)
G329564 NA non-coding upstream 150987 9565693 ~ 9568672 (+)
G329581 NA non-coding upstream 228114 9491274 ~ 9491545 (+)
G329701 NA non-coding downstream 2746 9726557 ~ 9728572 (+)
G329699 NA non-coding downstream 7126 9730937 ~ 9731833 (+)
G329718 NA non-coding downstream 8651 9732462 ~ 9732727 (+)
G329719 NA non-coding downstream 9295 9733106 ~ 9733506 (+)
G329720 NA non-coding downstream 10124 9733935 ~ 9734139 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other upstream 32168 9621679 ~ 9687491 (+)
bmp6 bmp6 other upstream 796866 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 898348 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 1053823 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 1169421 8388187 ~ 8550238 (+)
G329779 NA other downstream 67873 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 132371 9856182 ~ 9938468 (+)
G330038 NA other downstream 707522 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 871319 10595130 ~ 10768360 (+)
acad11 acad11,LOC107715568,LOC104947469 other downstream 1150398 10874209 ~ 10984209 (+)

Expression


Co-expression Network