G329701


Basic Information

Item Value
gene id G329701
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9726557 ~ 9728572 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390595
tctttttttcacaatttgaaAGCCTTATTCCTACTTTGTATTGCTTCTGTGCACCTTTCTGTCCACCATGGCACTATTTTCTTCTTTGATTTACTGCATTGTTTTGGAATCGACTCTTTTGCTACTTCTAATATAGCTCTACTGATTTCTgaattaataacattactcGGTTGTTCTATATCTATTGTTTGTACCTTTTTCTCACTTAGTATTCTAAATTTATTCCAAACTGCTTTCAAATTCcatctgccttttcttttttcctgttctatttcatttataattccTATATTTATGAATACTGGATAGTGGTCACTACCTATTGTGCACTCCCTAGATGCATCCCAAGTACTTATCCCAGCTAGTGATTGTGATACAAGCGTCAAATCAAGTGCTGACTCTGTGCCCTTCCCCAAATTCACTCTTGTGCCTGATCCATCATTTAAACGCACCAGTTCTTTTTCATCCATTAACTCTTCTATTACTTCCCCATTTGCATCTTCTTGATCCCCCCACACTGTGCTGTGCGCATTAAAATCTCCACACCAGATGATTTTCCCTCTCCAATGTTCCAGAATCCTCTCTAGTTTTTCCTTCTCTAATTTCTTGCATGGGttataaaagtttattattttcacatttccttTCTTGGTCCAGATTTCAACAACTATTAGTTCTAAGTCTTGTGTTGTTTGAACCCGTGAATGGTTTATACCTTCTTCAATGAATACAGCACATCTTCCTCCATTCCCACTGTCTCTATCTTTGCGAATACTGGAATACCCATGAATAACAAAATCTAGATTTGGTTTAAGCCAAGTTTCTTGTATGCATATGATGTCCAGTTTCCCTTTTAACTTCTTGATGAACCCTTTGAATTCTTGACCATTTGCTAATAGACTTCTGGCATTCCACTGAAGTATTAACATTATGGTATTAATTGAGATCAGCCTTCTGAGGTTCCCTCTCCTTGACTGAGATCTGTATGTAATTTCTCCCAGGATAATTCTTTTATGTTCAAAACTTTTGCTGCTGCTTTCAGATATCCCACCATCACATTACTAGGGAGAACATCTTCCTTAAACTTCAGGAGAACAGATTCGCTGTCaactttctctccatttctgaATGCTTGTAGTCGCCTAATTCCTGTGATTGTTCCTCCCTTCAACCTTTGTTTGAGTTCTTCTAGATTTTCTCCTACAGGTATTCCTCTTATTACTCCTTTCACTCCTGTCCTTTGACCAAGTACTTTTCTATCTACAATTTCCTTTTTACAGACACTTTGAAGCTTTAACGCCTTGTTTCTTTGCTCTGCACTTTTACACTTTACCAACAGGCTACCGTCTCGCAATACTTTAGCCATGTCgtcatccccaagtgtttttcTCAATCTATTTGTTAGTGACATAGGACTTAGTGACAACACTTCTCTTCCTGCCTTGAATTTTAGAATGATTTTATACTCCTCcatcattattttattcctgGCATCATACGTTTCCTCATCTTCCTCGAGTGCCCTTTTACCTGACTGTGTTACCTGTGTCATCTgagttctttctttccttccttcctcctcctttccTATTATTCACAATTCTAGTCCATTCAATATCcatattatcatcatcatcagacaAACCACCACTATTACTTGCCATCCTAATCCAGTCACCCACCCCAAGAATCAGCCGTGGGTTAAGCTCCAGCGTCTGGGCGTTTGGAAGTAAATTAGGCTGTGTTGTGGCAGTAAAGAAATGGATCTGTCACTAAGAAACATTAATTATTCTTAAGAAAAGAACGAAAAGAACTAAATGCAATTGCAACTGAGGTGGCCAATGGAGTGGCCAGGCTTCAGGCCATGGCCACCTCTCCCCTCAGCTCCGCCCCTGTTATCTCCCTGGTTTAACCCGCTCAGCAGTGTAAAATCAATCAGCGATCAAGTAGCATCCCGCATGTTGTtgtctttcattttattgttctgcaaatttactttcacttttaagATAGGta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390595 True 2016 lncRNA 0.39 1 9726557 9728572

Neighbor

gene id symbol gene type direction distance location
sycp2l sycp2l,LOC108261788 coding upstream 164368 9510608 ~ 9562189 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 275214 9438298 ~ 9451343 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding upstream 311175 9400242 ~ 9415382 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 377051 9333115 ~ 9349506 (+)
ofcc1 LOC108256210 coding upstream 538481 9082979 ~ 9188076 (+)
LOC113541200 dnajc13 coding downstream 454219 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 616751 10345323 ~ 10426436 (+)
lztfl1 lztfl1,LOC107701792 coding downstream 712385 10440957 ~ 10477542 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 820156 10548728 ~ 10552018 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding downstream 1082034 10810606 ~ 10828391 (+)
G329697 NA non-coding upstream 2746 9719659 ~ 9723811 (+)
LOC117595805 NA non-coding upstream 11818 9695659 ~ 9714739 (+)
G329689 NA non-coding upstream 125717 9600608 ~ 9600840 (+)
G329685 NA non-coding upstream 150853 9575389 ~ 9575704 (+)
G329564 NA non-coding upstream 157885 9565693 ~ 9568672 (+)
G329699 NA non-coding downstream 2365 9730937 ~ 9731833 (+)
G329718 NA non-coding downstream 3890 9732462 ~ 9732727 (+)
G329719 NA non-coding downstream 4534 9733106 ~ 9733506 (+)
G329720 NA non-coding downstream 5363 9733935 ~ 9734139 (+)
G329721 NA non-coding downstream 7229 9735801 ~ 9736031 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other upstream 39066 9621679 ~ 9687491 (+)
bmp6 bmp6 other upstream 803764 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 905246 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 1060721 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 1176319 8388187 ~ 8550238 (+)
G329779 NA other downstream 63112 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 127610 9856182 ~ 9938468 (+)
G330038 NA other downstream 702761 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 866558 10595130 ~ 10768360 (+)
acad11 acad11,LOC107715568,LOC104947469 other downstream 1145637 10874209 ~ 10984209 (+)

Expression


Co-expression Network