G329718


Basic Information

Item Value
gene id G329718
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9732462 ~ 9732727 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390613
GgaaattaatttgattttttcaAAATACTTCTCTGATCTTTATTCCTCAGAATGCAACTCAAAAATTTTGAATGTCCCAAATCCATTTGATCAACTTATATTCCCTTGTGTTAATGATGGCTCGACAAATGATTTGGGTAGACCTGTGTCAATCACAGAAGTACAAGAGGCAATTCAATCACTTCAAAATGGTAAATCACCTGGCCCAGATGGCTTTACAATCGAATTTTATAAGACTTTCTCCTCCGTTCTAGCCCCAATTCTAC

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU390613 True 266 lncRNA 0.36 1 9732462 9732727

Neighbor

gene id symbol gene type direction distance location
sycp2l sycp2l,LOC108261788 coding upstream 170273 9510608 ~ 9562189 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 281119 9438298 ~ 9451343 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding upstream 317080 9400242 ~ 9415382 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 382956 9333115 ~ 9349506 (+)
ofcc1 LOC108256210 coding upstream 544386 9082979 ~ 9188076 (+)
LOC113541200 dnajc13 coding downstream 450064 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 612596 10345323 ~ 10426436 (+)
lztfl1 lztfl1,LOC107701792 coding downstream 708230 10440957 ~ 10477542 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 816001 10548728 ~ 10552018 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding downstream 1077879 10810606 ~ 10828391 (+)
G329699 NA non-coding upstream 629 9730937 ~ 9731833 (+)
G329701 NA non-coding upstream 3890 9726557 ~ 9728572 (+)
G329697 NA non-coding upstream 8651 9719659 ~ 9723811 (+)
LOC117595805 NA non-coding upstream 17723 9695659 ~ 9714739 (+)
G329689 NA non-coding upstream 131622 9600608 ~ 9600840 (+)
G329719 NA non-coding downstream 379 9733106 ~ 9733506 (+)
G329720 NA non-coding downstream 1208 9733935 ~ 9734139 (+)
G329721 NA non-coding downstream 3074 9735801 ~ 9736031 (+)
G329797 NA non-coding downstream 76747 9809474 ~ 9809747 (+)
LOC117595795 NA non-coding downstream 252695 9985422 ~ 9987589 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other upstream 44971 9621679 ~ 9687491 (+)
bmp6 bmp6 other upstream 809669 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 911151 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 1066626 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 1182224 8388187 ~ 8550238 (+)
G329779 NA other downstream 58957 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 123455 9856182 ~ 9938468 (+)
G330038 NA other downstream 698606 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 862403 10595130 ~ 10768360 (+)
acad11 acad11,LOC107715568,LOC104947469 other downstream 1141482 10874209 ~ 10984209 (+)

Expression


Co-expression Network