G329755


Basic Information

Item Value
gene id G329755
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9719665 ~ 9723670 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390656
tgctataCGCTCTCGCGAGAGTTTCCGCAGCACATGTTTCAACGAGCCAGTGGAGGAGTCCGACGCTTCGTGTACGAGCACGTCGTTACAGATGAGCTCATGAAATCAAAATtcaattaattgttttaatgcTTTCAAAAACTACATTGTCAATTTAGCGGAGGTTTATCCATGCCATGCACAAAAAGCAAAGTAGGTCATACAGGCTTGGAACAATATGAGGGTGAGTAATgatgacacaattttcatttttgtgtgaatGTACTACTGGTTGCTGTAAAAGTACTTTAGTCATGGTGCGCCCCCTATCTGTGGATGAATGGTACCTACATAGGCGTGACACCAAAGAGATTGgaattttggtttaaaatgtgCACTGTTACTCACAAACCATCAGACTTAAAAGAAGTCTGTCGCACACTGATGATGGTTGCTGCCTCACAATAACGGTCCctgatttgatcctgagctcacgTTACcatctgtgtgaagtttcagATGATGTCCCCTTGTCTGCATGGGTTTGGTCTGGTTTCTCCTGTTTCCACCCACCTCACACAAACATACCAATAGGCAGACAGgttacacaatatatacacacactatatatcactatatcagATCAGCAATTAGAATGTTTTTAGTCCCCTtcgagagactgaactaatttcactaatttcctcatcaaaatcatcaacttgtgtactagatcccttacctacatggtTCTTCAATCAGATTAGCaatcttctaaaaataatcagttcttccattagcactggctatgtatgTAAATCTTCTAAACTAGTAGTTATCAAATCCATGAATTAAAAAATCTGACCTCCACCTCTGTCGGCtgtccaagatcctagaaaaagGTTGTAGCaaagcagttatgctcataccacataggaataacatttatgaaatgtatcagtcaggatttaagcctcatcatagcacagacagcactggttaaagtggtaaatgacgtACTACTGGTCTTTGATCAGGactgtgtctccttgcttgtgttgcttgaacttagtgcagcttttgacaccatcgatcatgctattctccttgatagactagaaaatgttgttgaagttaagggaacggccctctcctggctcaggtcttatttgactgatcgttctctaagcatactaaggtaaagtttggtgttccacaaagttctgttttaggcccactgcttttttctttatatatgctacctctggataaaattattcgtaaacatggtattagcttccaatGTTATGTTGAtgacacagttgtatgtttcagcaaagccagatgagagacaaccagcttaataaagttgaggaatgtgtaaaggacattagacaatGGATGCTTAGTAACTTCCTTCTAcatttaattctgacaagaagtacgtgtactaggaccacatacacttagaagtaagctttctgactacatagtaactctggatggcctttcatcaagtgcagcagtaaaagaccttggtgtgattattgactccagtctttcatttggaGCTcttgtagataatattactagaatagccttctttcatctcagaaatattgccaaGGTAACAAATATAATGTCAcaacatgatgcagaaaaactagttcatgcgtttgttacctctaggttggaatattgtaatgccttactgtctggatgttccactaggtgcataaacaagctccagctagtccagaatgcagcagtgagaatcCTTACTacaaccagaagatatgactaCATCACCCCTATCTGATCCACACTGCATTTGTCTCCAgaattagtgtttgggactcagacacagtctcagtgtttaagtctaggctgaaaacatttatttagttaagccttttgtgaatagttttttcttaggcaAAGGAGCAGATCTAGAGGGTTCACGGGCATAGAGTGGTGAACTGGGATTTTTGGATGCTGTTGCGTCTCCCACGTTCACTCATGTTTGTTGaaggtggagtggctggctggtTTATGACCCAAGGCACCCTTGTGTCTGTGTTGctttctggctctcccttttgttatgctgtcatagctagtcttgcctgAGTCCTTGCTTGCACtttgcacacaatgtacattgtccttaacgaTTACTTGACAATAAgaatacctaataatctgtgtttctctctttctctctctctctctctgtcgagctacacattctactcctgagatatcattgatcctgaccccttctgctctctggacctgcctgatctgGCCTGATGCCTTACTTCTgattggagttctcatcacttggaaaccacttgctgctgctgaggatagccccatatggacagcctaaagatacatgagattactgtggatggtaccacttagaaaccatgaagatggcttcggactgcaattgatacagttttgctatgatggctgTGCAGGTTGGTCCATTTCAGACTAACGTCTGGGCCTTCCTACTCTGCTTCAGCTGCTGCTTCATCAGCCTTGTGTTGCCACTTCTGACCCAGAATGATGTCATCAATGGGCAACAGTATTTAGAAGTGATGAAAACCAATGCCCCCAGCTTTGAATTGTCTGTGCTCACCCGATTGCATTTGTGGTTGTACTCGTTAATCCATTCTGTGCTTTTGTTGTGTATTTCTGGTTTCGAACGGTGTCTATCCTGACTGTGAGCTTGATCTGTCCCTTGGTTATTGTCTGCTGCCTAGGTTTGTAAATAGTCAcactgctgtatttttttttgtaaatatcgacatattgtatatattcaCCGGGAGTAGTGGTGCAGCTGCTATTTCTGTTGGgtgttaacaaaaatattgcattaatgtttaagaattacagccattttttttctataacagagtccctccattttcacagacacaaaagtaattggacatattaatataatcataaatattatgattatttttaatacttaaaaGGAATGCagatcctttgcagtcaataacTACATGAAGTCTGAAATCTgtggacatttaagaacatttaatttcttttctttgaatcctttccttttccatactcttctcttcccatcattctggtacaagtgaATCTTGTATCAGaactgttcagttttttttttaaagcaaaatctaatctggcctttctgttcttgagtgtagTTTCTTGAACACTACTGTTCTTGAACAGTAGTTTgtatcttgaggtaaactgtctgtatttacattcatgaagtcTTGATTATAGACTTTGctatgcctacctcctccagagtgtccTTGaattggctagatgttgtgaatggtttttcttcaacaaggaaagaattcggCGACCATCcgctttagttgtcttccgtggccttttggtgttcctgatgttatacactcactgtccactttaataggaacacctgtacatctgcacattcatgcagttatccaatccgccgatcatgtggca
>TU390657
tgctataCGCTCTCGCGAGAGTTTCCGCAGCACATGTTTCAACGAGCCAGTGGAGGAGTCCGACGCTTCGTAAGTAGGTCATACAGGCTTGGAACAATATGAGGGTGAGTAATgatgacacaattttcatttttgtgtgaatGTACTACTGGTTGCTGTAAAAGTACTTTAGTCATGGTGCGCCCCCTATCTGTGGATGAATGGTACCTACATAGGCGTGACACCAAAGAGATTGgaattttggtttaaaatgtgCACTGTTACTCACAAACCATCAGACTTAAAAGAAGTCTGTCGCACACTGATGATGGTTGCTGCCTCACAATAACGGTCCctgatttgatcctgagctcacgTTACcatctgtgtgaagtttcagATGATGTCCCCTTGTCTGCATGGGTTTGGTCTGGTTTCTCCTGTTTCCACCCACCTCACACAAACATACCAATAGGCAGACAGgttacacaatatatacacacactatatatcactatatcagATCAGCAATTAGAATGTTTTTAGTCCCCTtcgagagactgaactaatttcactaatttcctcatcaaaatcatcaacttgtgtactagatcccttacctacatggtTCTTCAATCAGATTAGCaatcttctaaaaataatcagttcttccattagcactggctatgtatgTAAATCTTCTAAACTAGTAGTTATCAAATCCATGAATTAAAAAATCTGACCTCCACCTCTGTCGGCtgtccaagatcctagaaaaagGTTGTAGCaaagcagttatgctcataccacataggaataacatttatgaaatgtatcagtcaggatttaagcctcatcatagcacagacagcactggttaaagtggtaaatgacgtACTACTGGTCTTTGATCAGGactgtgtctccttgcttgtgttgcttgaacttagtgcagcttttgacaccatcgatcatgctattctccttgatagactagaaaatgttgttgaagttaagggaacggccctctcctggctcaggtcttatttgactgatcgttctctaagcatactaaggtaaagtttggtgttccacaaagttctgttttaggcccactgcttttttctttatatatgctacctctggataaaattattcgtaaacatggtattagcttccaatGTTATGTTGAtgacacagttgtatgtttcagcaaagccagatgagagacaaccagcttaataaagttgaggaatgtgtaaaggacattagacaatGGATGCTTAGTAACTTCCTTCTAcatttaattctgacaagaagtacgtgtactaggaccacatacacttagaagtaagctttctgactacatagtaactctggatggcctttcatcaagtgcagcagtaaaagaccttggtgtgattattgactccagtctttcatttggaGCTcttgtagataatattactagaatagccttctttcatctcagaaatattgccaaGGTAACAAATATAATGTCAcaacatgatgcagaaaaactagttcatgcgtttgttacctctaggttggaatattgtaatgccttactgtctggatgttccactaggtgcataaacaagctccagctagtccagaatgcagcagtgagaatcCTTACTacaaccagaagatatgactaCATCACCCCTATCTGATCCACACTGCATTTGTCTCCAgaattagtgtttgggactcagacacagtctcagtgtttaagtctaggctgaaaacatttatttagttaagccttttgtgaatagttttttcttaggcaAAGGAGCAGATCTAGAGGGTTCACGGGCATAGAGTGGTGAACTGGGATTTTTGGATGCTGTTGCGTCTCCCACGTTCACTCATGTTTGTTGaaggtggagtggctggctggtTTATGACCCAAGGCACCCTTGTGTCTGTGTTGctttctggctctcccttttgttatgctgtcatagctagtcttgcctgAGTCCTTGCTTGCACtttgcacacaatgtacattgtccttaacgaTTACTTGACAATAAgaatacctaataatctgtgtttctctctttctctctctctctctctgtcgagctacacattctactcctgagatatcattgatcctgaccccttctgctctctggacctgcctgatctgGCCTGATGCCTTACTTCTgattggagttctcatcacttggaaaccacttgctgctgctgaggatagccccatatggacagcctaaagatacatgagattactgtggatggtaccacttagaaaccatgaagatggcttcggactgcaattgatacagttttgctatgatggctgTGCAGGTTGGTCCATTTCAGACTAACGTCTGGGCCTTCCTACTCTGCTTCAGCTGCTGCTTCATCAGCCTTGTGTTGCCACTTCTGACCCAGAATGATGTCATCAATGGGCAACAGTATTTAGAAGTGATGAAAACCAATGCCCCCAGCTTTGAATTGTCTGTGCTCACCCGATTGCATTTGTGGTTGTACTCGTTAATCCATTCTGTGCTTTTGTTGTGTATTTCTGGTTTCGAACGGTGTCTATCCTGACTGTGAGCTTGATCTGTCCCTTGGTTATTGTCTGCTGCCTAGGTTTGTAAATAGTCAcactgctgtatttttttttgtaaatatcgacatattgtatatattcaCCGGGAGTAGTGGTGCAGCTGCTATTTCTGTTGGgtgttaacaaaaatattgcattaatgtttaagaattacagccattttttttctataacagagtccctccattttcacagacacaaaagtaattggacatattaatataatcataaatattatgattatttttaatacttaaaaGGAATGCagatcctttgcagtcaataacTACATGAAGTCTGAAATCTgtggacatttaagaacatttaatttcttttctttgaatcctttccttttccatactcttctcttcccatcattctggtacaagtgaATCTTGTATCAGaactgttcagttttttttttaaagcaaaatctaatctggcctttctgttcttgagtgtagTTTCTTGAACACTACTGTTCTTGAACAGTAGTTTgtatcttgaggtaaactgtctgtatttacattcatgaagtcTTGATTATAGACTTTGctatgcctacctcctccagagtgtccTTGaattggctagatgttgtgaatggtttttcttcaacaaggaaagaattcggCGACCATCcgctttagttgtcttccgtggccttttggtgttcctgatgttatacactcactgtccactttaataggaacacctgtacatctgcacattcatgcagttatccaatccgccgatcatgtggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390656 True 3495 lncRNA 0.40 2 9719665 9723670
TU390657 False 3376 lncRNA 0.40 2 9719665 9723670

Neighbor

gene id symbol gene type direction distance location
mppe1 mppe1 coding downstream 2099 9687555 ~ 9717566 (-)
elovl2 elovl2,LOC101268971 coding downstream 147460 9552595 ~ 9572205 (-)
gcm2 gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 coding downstream 209476 9504137 ~ 9510189 (-)
mak mak coding downstream 247253 9451374 ~ 9472412 (-)
bloc1s5 bloc1s5 coding downstream 752490 8962772 ~ 8967175 (-)
LOC113532851 NA coding upstream 72664 9796334 ~ 9819533 (-)
LOC113541360 NA coding upstream 561164 10284834 ~ 10284937 (-)
si:dkey-12l12.1 NA coding upstream 1252104 10975774 ~ 10980139 (-)
LOC113541107 NA coding upstream 1382744 11106414 ~ 11109555 (-)
prlh2 prlh coding upstream 1585084 11308754 ~ 11310736 (-)
G329756 NA non-coding downstream 373 9718162 ~ 9719292 (-)
G329722 gnal,LOC107742053,LOC107702493 non-coding downstream 96993 9621711 ~ 9622672 (-)
G329686 NA non-coding downstream 143970 9575384 ~ 9575695 (-)
G329531 NA non-coding downstream 369828 9349466 ~ 9349837 (-)
LOC117595799 NA non-coding downstream 637882 9057215 ~ 9081783 (-)
G329761 NA non-coding upstream 5198 9728868 ~ 9731870 (-)
G329762 NA non-coding upstream 9227 9732897 ~ 9733512 (-)
G329764 NA non-coding upstream 10523 9734193 ~ 9734740 (-)
G329765 NA non-coding upstream 12127 9735797 ~ 9736156 (-)
G329766 NA non-coding upstream 15594 9739264 ~ 9740011 (-)
sec61b sec61b,LOC102796100 other downstream 2333318 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 2657237 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 3336077 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 3741286 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 4742138 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 427827 10151497 ~ 10156800 (-)
G330185 NA other upstream 799062 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 1199456 10923126 ~ 10930775 (-)
G330379 NA other upstream 1358598 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 2220384 11944054 ~ 11996700 (-)

Expression


Co-expression Network