G329771


Basic Information

Item Value
gene id G329771
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9766077 ~ 9768575 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390677
GGAAGGATTTGCCTTCCAGCCCGGATCTAGCAGTACAAGACAGCTGTCTCTTCACAGTGGCATCTACTTGGCAACCTCAAATGTTGCTTGCAGCAAATGTACTCTGGAACAAATCCTCCACAACTGTAGAGGGGGACAGAGAGCTGATGCCACTCCACACCCGGAAACTCACATGAGTAATGCCACTGCAACCTCTAACCCAGAAGTGTATAACCAGCATGTTCCACTTGTGCTACTAGAGAAATATGATGATTCCCCAGGAAAATGCAAGGGCTTCCTTATGCAGTGTGTTATTCACTTCTCTAGCACTTCCAACCACTTCTCCCATGATGTGGAGAAAATTAGCCAAGTGCTAAAGCTGCTTTCAGGGTGTGCACCAATCTATGCCACTGCTACATTTAGTCACATGATGCTAACCCAGAGTTATGCTGTTTTGGAGCAGAGAGTTATTTGACCACCCTGAGACTGGAAAAGATGCTAGAGAGAGATGGCTGTTCATCAAACAAGGATACCACCCATAATCCAATGGGCAGACTGAGCAGGTGAATCAACCAGCATGACTGGAACCGATATCTCCCGTGGGCAGAATATGCCCAAAAACCTCCCTTATTCAGTCCTTCACCAGCCACACAACATTCCAGTGTGTTATGGGGTACCAACCTTTTGCTGTTCCCCTGGTCAGGTGAATCCTCTAATGTTCCAGCAGTGGACAACTGGATGGGAAGACATGGGAAGCAACATACATCTGCCTCATGAGAGCTATCCAAAAAAAGCAGCAGGCAGATCATCACTGACACTCTGATCAACTCCTGCACCCAGGACAAATGGTGTGGCTGTTAATTGTTGACCTCAGACTCAAATTACCTTAACGGAAGTTAAGTCCACTTTTCATAGGTCCATTCAAGGTTCTAAAGCAAAAGAATCCTGTCTTGTGTGAACTAGACTTACCACCACACTGTAAAATAGCCCTCCACGTTTCACATATCCTTGCTCAAACCCTGTGTTTCCATGACTTCCCCCCAAGTGACCAAGTCTGATCCATCCCCACCACTGGAGATTGAGGGAACCCCTGTGTACTCGAGGGAAACTCTGTGTAGCCAAGACCCTCCTTGACTCCGAGCAGCAAGAAAACATCATGTACTACCAAGCCAGTAGAACACTCCTGGGTCCCAGCTAAGAACATTCTGGACCCATCTCTCAGTGCTGAATATCACAGAGAACACCCTGACCACCCAGGCCCAGAGATAGACCCTGCCTTCAGGAGCTGCTTCTTGTGGGACAGGGCGGGATTTTGAAACATCTAGCCAGGACATTACCACCCatgaccaccagagggcaccctcaCCAGTGTTCTAGGACAGTTCTTCATTTATTCCACTCATTGCACAATATATAAACCACATGGAATTTACAGTTTGCCTGCATCCTTGTAAATACTGAGCCTTGCTTATTCTTGACCGTTATCCTGTTTTTGACCTATTTATGATCTGTTTTTCCTTGCCACGGTTTTGCCTTTGTCGCACC

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0033554 cellular response to stress biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU390677 True 1524 lncRNA 0.47 2 9766077 9768575

Neighbor

gene id symbol gene type direction distance location
mppe1 mppe1 coding downstream 48511 9687555 ~ 9717566 (-)
elovl2 elovl2,LOC101268971 coding downstream 193872 9552595 ~ 9572205 (-)
gcm2 gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 coding downstream 255888 9504137 ~ 9510189 (-)
mak mak coding downstream 293665 9451374 ~ 9472412 (-)
bloc1s5 bloc1s5 coding downstream 798902 8962772 ~ 8967175 (-)
LOC113532851 NA coding upstream 27759 9796334 ~ 9819533 (-)
LOC113541360 NA coding upstream 516259 10284834 ~ 10284937 (-)
si:dkey-12l12.1 NA coding upstream 1207199 10975774 ~ 10980139 (-)
LOC113541107 NA coding upstream 1337839 11106414 ~ 11109555 (-)
prlh2 prlh coding upstream 1540179 11308754 ~ 11310736 (-)
G329766 NA non-coding downstream 26066 9739264 ~ 9740011 (-)
G329765 NA non-coding downstream 29921 9735797 ~ 9736156 (-)
G329764 NA non-coding downstream 31337 9734193 ~ 9734740 (-)
G329762 NA non-coding downstream 32565 9732897 ~ 9733512 (-)
G329761 NA non-coding downstream 34207 9728868 ~ 9731870 (-)
G329778 NA non-coding upstream 22086 9790661 ~ 9790884 (-)
G329810 NA non-coding upstream 78442 9847017 ~ 9847564 (-)
LOC117595785 NA non-coding upstream 143947 9912522 ~ 9913573 (-)
G329934 NA non-coding upstream 370128 10138703 ~ 10138957 (-)
G329941 NA non-coding upstream 387355 10155930 ~ 10156285 (-)
sec61b sec61b,LOC102796100 other downstream 2379730 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 2703649 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 3382489 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 3787698 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 4788550 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 382922 10151497 ~ 10156800 (-)
G330185 NA other upstream 754157 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 1154551 10923126 ~ 10930775 (-)
G330379 NA other upstream 1313693 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 2175479 11944054 ~ 11996700 (-)

Expression


Co-expression Network