G329779


Basic Information

Item Value
gene id G329779
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9791684 ~ 9792733 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390686
gctttgtgcactggtgcacagtcatgttggaagaggaaggggctcgcgccaaactgttcccacaaggttgggagcatggaattgtccaaaatgttttggtatcctgaagcattcaaagttcctttcactggaactaaggggccaagcccaactcctgaaaaacaaccccacaccataattcctcctccaccaaatttcacactcggcacaatgcagtccgaaatgtaccgttctcctggcaacctccaaacccagactcgtccatcagattgccagatggaaaagcgtgattcatcactccagagaacgcatctccactgctctagagtccagtggcggcgtgctttacaccactgcatccgacgctttgcattgcacttggtgatgtgtggcttggatgcagctgctcggccatggaaacccattccatgaagctctctgcgtactgtacttgggctaatctgaaggtcacatgaagtttggagctctgtagcaattgactgtgaagaaagtcgacgacctctttgcactatgtgcttcagcatccgctgacccctctccgtcagtttacgtggcctaccacttcgtggctgagttgctgttgttcccaaactcttccattttgttatgataaagctgacagttgactgtggaatatttaggagcgaggaaatttcacaactggatttgttgcacaggtggcatcctatgacagttccacgctggaattcactgagctcctgagagcggcccattctttcacaaatgtttgtaaaaacagtctgcatgcctaagtgcttgattttatacacctgtggccaggccaagtgattaggacacctgattctgatcatttggatgggtgaccgaatacttttggtaatatagtgcaTCTTCTACCCTATGTGGAAGCACAGCAGATGCTTCTATGTTACGCCAAGCAATCTCAGAGTTTACCTCCACCCAAGTCTTAAAAGAGCGTAGCCGACATGCCCAGAAATATAGTTGATCGTTAGGAGTGCCAAAACTCCTTTGGCAGGGCTTCTCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390686 True 1050 TUCP 0.48 1 9791684 9792733

Neighbor

gene id symbol gene type direction distance location
sycp2l sycp2l,LOC108261788 coding upstream 229495 9510608 ~ 9562189 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 340341 9438298 ~ 9451343 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding upstream 376302 9400242 ~ 9415382 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 442178 9333115 ~ 9349506 (+)
ofcc1 LOC108256210 coding upstream 603608 9082979 ~ 9188076 (+)
LOC113541200 dnajc13 coding downstream 390058 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 552590 10345323 ~ 10426436 (+)
lztfl1 lztfl1,LOC107701792 coding downstream 648224 10440957 ~ 10477542 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 755995 10548728 ~ 10552018 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding downstream 1017873 10810606 ~ 10828391 (+)
G329721 NA non-coding upstream 55653 9735801 ~ 9736031 (+)
G329720 NA non-coding upstream 57545 9733935 ~ 9734139 (+)
G329719 NA non-coding upstream 58178 9733106 ~ 9733506 (+)
G329718 NA non-coding upstream 58957 9732462 ~ 9732727 (+)
G329699 NA non-coding upstream 59851 9730937 ~ 9731833 (+)
G329797 NA non-coding downstream 16741 9809474 ~ 9809747 (+)
LOC117595795 NA non-coding downstream 192689 9985422 ~ 9987589 (+)
G329933 NA non-coding downstream 346022 10138755 ~ 10138977 (+)
G329942 NA non-coding downstream 365622 10158355 ~ 10158585 (+)
G329949 NA non-coding downstream 371186 10163919 ~ 10164120 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other upstream 104193 9621679 ~ 9687491 (+)
bmp6 bmp6 other upstream 868891 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 970373 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 1125848 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 1241446 8388187 ~ 8550238 (+)
cdh19 LOC108256684 other downstream 63449 9856182 ~ 9938468 (+)
G330038 NA other downstream 638600 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 802397 10595130 ~ 10768360 (+)
acad11 acad11,LOC107715568,LOC104947469 other downstream 1081476 10874209 ~ 10984209 (+)
G330257 NA other downstream 1180531 10973264 ~ 10974915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1187390 NA unknown NC_048577.1 CM023231.2 54264066 ~ 54265028 (+)