LOC113541109


Basic Information

Item Value
gene id LOC113541109
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10151497 ~ 10156800 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390855
CTCAGGCAATGTGCCCACTGGTGCCCATTATGGGCCCGCTGCATGCCCACAGTTACTGGCATGAAAAGCAGGGCACATGTGGGGCCCAAGTGGGACAGTCTAGTAGTCCCACTCTACTTAGTGTGGGAAGCCCACCCTCAGCCCACACTTTTGGGCTGTCCCACTGGGGCCCCACACGGAACACAAAGGGGCATGTTTGCTGGGAAGCGGC
>XM_034297838.1
TCGTGAAGTTTGTTAAATACATCATCATGCATACTGGTTGCTGCATGATTTCTGTACTGTGCTAGTGTCTGGCGGTCGTATACATGAACACATGTATCCTCCCTGCTATCATCCCCTCCTAAGGCCGATGGATCCCTAACTGTCTCCTGTGTGCACGGGGACATCCAGAAGGTTCCCGCAGCTAGAGTTAGAGTCAAACATTGGGCCGAGGAGTGGCCGCTCCTTGTGGGCCTCATCCCGGAGCTCCCCGTGCCTCTACTCCTGGGTTGAGACTGGCCGGGTTTCTCCATCACCAGGACATCAAGGCCTCCTTGGAGACATAGGCCCAGAGTGATGCAGCCGCGGGTCTGGTGGGCCTGCCTGGCACAGGATGAAGGTGACGCCAGGGCGACCTCAGCAGGATTCTATGAGAGCTTCACAGTGGAAGTGTGTATGGCATCCAGGAGTGACACCCAGCAACAAGAGAGCACCGAGCCAACAGCCGTTAGATGCCTTGTCCTGAGGGGACTTCCAGTCATTTTTGGAGATGATGCATCTATGTTCTTTAAGAGCAGCTCTGATGAAGTCTCCTTGGACATTCCAGTGGGTATCCTCTGCTTTGAGGACAACAGAGCCGCAAGTCCAGCATCGCCACAACTGAACCCCTCAAGAGTGGGAATCATCCTAGAGGGCAGCCTTGTCATGGATAAACTCACCAGCTTGCCTCAGGCAATGTGCCCACTGGTGCCCATTATGGGCCCGCTGCATGCCCACAGTTACTGGCATGAAAAGCAGGGCACATGTGGGGCCCAAGTGGGACAGTCTAGTAGTCCCACTCTACTTAGTGTGGGAAGCCCACCCTCAGCCCACACTTTTGGGCTGTCCCACTGGGGCCCCACACGGAACACAAAGGGGCATGTTTGCTGGGAAGCGGCGTCAGACACTTTTATATTATGGAACTCTGCTGCTACACTTGTGCTGCTACATCACACAatagcccatgttctgtACTACATCCAAAAGAAATTCAGTGTTTCTACATCTGAGATAAAGGCAATCAAGCTGAACAATGAGGATAAGctcttcaaaaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390855 False 211 lncRNA 0.60 1 10152020 10152230
XM_034297838.1 True 1074 mRNA 0.53 5 10151497 10156800

Neighbor

gene id symbol gene type direction distance location
LOC113532851 NA coding downstream 331964 9796334 ~ 9819533 (-)
mppe1 mppe1 coding downstream 433931 9687555 ~ 9717566 (-)
elovl2 elovl2,LOC101268971 coding downstream 579292 9552595 ~ 9572205 (-)
gcm2 gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 coding downstream 641308 9504137 ~ 9510189 (-)
mak mak coding downstream 679085 9451374 ~ 9472412 (-)
LOC113541360 NA coding upstream 128034 10284834 ~ 10284937 (-)
si:dkey-12l12.1 NA coding upstream 818974 10975774 ~ 10980139 (-)
LOC113541107 NA coding upstream 949614 11106414 ~ 11109555 (-)
prlh2 prlh coding upstream 1151954 11308754 ~ 11310736 (-)
zfand1 zfand1,LOC107739158,LOC107681457,LOC107554718 coding upstream 1198372 11355172 ~ 11368763 (-)
G329934 NA non-coding downstream 12540 10138703 ~ 10138957 (-)
LOC117595785 NA non-coding downstream 237924 9912522 ~ 9913573 (-)
G329810 NA non-coding downstream 303933 9847017 ~ 9847564 (-)
G329778 NA non-coding downstream 360613 9790661 ~ 9790884 (-)
G329771 NA non-coding downstream 382922 9766077 ~ 9768575 (-)
G329943 NA non-coding upstream 2967 10159767 ~ 10159983 (-)
G329952 NA non-coding upstream 9275 10166075 ~ 10166604 (-)
LOC113541201 NA non-coding upstream 22408 10179208 ~ 10182831 (-)
G329996 NA non-coding upstream 51781 10208581 ~ 10213864 (-)
G329997 NA non-coding upstream 51939 10208739 ~ 10211577 (-)
sec61b sec61b,LOC102796100 other downstream 2765150 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 3089069 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 3767909 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 4173118 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 5173970 4932155 ~ 4977527 (-)
G330185 NA other upstream 365932 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 766326 10923126 ~ 10930775 (-)
G330379 NA other upstream 925468 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 1787254 11944054 ~ 11996700 (-)
LOC113541288 NA other upstream 2519745 12676545 ~ 12677938 (-)

Expression


Co-expression Network