LOC113541201


Basic Information

Item Value
gene id LOC113541201
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10179208 ~ 10182831 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390904
GTCTGAAATTGCATACTGTGTTGCCCTTTAAGAAATTTAACGTTCAAAtatctgctttaaatatttttggtaaATATTCTCAAGTAAAAATGTGAAGTTCATAATTACTTTTCCTTTATCTACCTCGtttgtaaaaatttatattatttgtttcaTGTGACGAAGTCACTTCCTGTTAGTGCTCCCGGGTCTGCATGAAAACAATGAGACAGACATAGTGTGTTCTCTCTGATAATCCATTGCATCCACTAAAAAGCATCATAGAGGCAATGCCttttcactGCAAATGTTAATGAGGAAGAGTGACAGTAAATGATCAACCTTACTACGACTCTGTTTTCATTGGCTACGGTTTAACTTGGTGTTTAGTCAGAGTTTCAACACACTGCACAAGAACACTACagtgccacttgggggccgtggagatggcttgaagatctcatatggggagttgtactgtgatggcttgggactgcgattgctgtagtggctttggggctgcggttggcACGAGCAGCTTTgttctcaggactccatcagtggatggtggataggtttaacaaaccggacttATTTTGAAAACTgcgatgaatttactggttgcatgattgcactatttgtccatacagtacacagttatagaagggaattacttataattacactatctgttgtcacccagatgaggatggattcccttttgagtctggttcctctcaaggtttcttcttcatatcatcttagggagtttttcctgctggcttgctcattagggaaaaattcacgtatttacaatttattttggtttaaattaatttgaatctatttatttctgtaaagctgctttgtgacaatgccc
>XR_003404158.2
AACCGGTACACTAATTAAGTTAGTTCCCCTCTTTCCCCGTTATGTGAAATCATGACGTGTTCGGCTGATGCTGCTTATCGGCTGATTAAGAGACTTGGACAGGCTTTGTGAGCCCCTGAAGGGCGGTACTCATTGAACACCAGCTGCTTtgatgagaaacaggattagccCATTGGGATGATGcatatttcctgtttctgtttgaaagctactagccAGGCAGCTGCACTATAAGCACAGAGATATGGAGGTGAGAGCCAGTGAAGTAGCCTGATCAAGTCAAAAGTTAAGTAGATCAGGGTTTATAATAAGGTGTAAAGTTTTCCtattattaacagattattttaatcatttacagtggaactgtcataaagatATTTTATGGCAAATTTATTAATGTGGAAAGATTGATGGTAGGttgtgccttaaatgattaaataacaaatttgtcATCACCGCTCCTACTGCTGCTGACATCCACCTGAAATTCATGAGCGTGTTCTAACTGTACAGTAAaacaatcatgattttattttatatatttcctgATCCCACCGAAATTAATTTCCGGTTAcgccactgccagcacaacacactaCATGCTTCTGAATCGATTTTAGACGCAAGTGCGACTTACATCAAGCACAGTACGCAGGCCACACTCACACCGCGGTCAAGCCAGCCGTAGTAGAAACTGGAGTGCACGTATATACGGCGATACTGTATTTTTCCCACATATCACTGAAGGCTACCTCACAGGGGTAGCAGAGGGCCCCTTCTCACACCTCAGTTGGAGAAGGCTATCTGCACCATGGTCAGAGCAAATAATGCCATTAAACTAAGGGAGTGCTATTATAAGACGACAGCAATGTCTTTGAAAACATCCAATCTGTTAGCATTTCAGCTACCGACACGGTGCTGAAAAGACGCCACATGAGCATGAAACAGCTGTACCGTGTTGCATTCGAAAGAAATGGTGACAGAGTGAAGGAGATACGGTACCAGTATGTACAGGGTGTTTCTCAAACAGAAGGTGTCATCAAGCGCCGTCAAAGGCCGTCTTCATCTGAAGCATCCTTGGAAGGCAGCCTTCATTTCGTGGCCTTCATTCTGCAGATTTTGAATGATGCATCAGTGTATCCTTCGCGTCCTCCAGTCACCCACAATCCTTTGCACACATTCCGAAATTCACGAAAAAAACGACGGGACACGAGTCAGCTCTGAGCTTCCCCGAGTTTGTTATGAAATGTAAAACCAAAAATGTGTCGAAGATGAAGgcattcatgttttctttcgttttgttttgttacaaaTTAAATGCTGCCCATGTTATAAACCACTGGGAGACCACAGACGGTTGTCATATCATTCGCATTCGCTGTATTGCGTTATATAAAGTCAGTtaatataaagatttttaaaaagtactttaaattatttttaaatagtattaCAATACTACAATTCACCACAACACTACAAAAAGCAATTCACCGTAATAGTGCCATAACGTAAtaccattatatttttataacgtAATTCCATTATATTTTGTGGCGTTTTTCATACAGTGCAGATCTCGTAAATTACATCCCTAGCGAAAGTAAAAGAGAATGATTTAAGTTAAGcttgaatatattatttttagctCAAGCTgttgattattaatattatatgttAAGCAGAAGTGTAGCAGTTAGCTTTTTCTTTTATGTGTTCTGTCAAATGAACAGTAGGAGGTGCTCTATGcatatgttctttttttcctttcttccttatATACCTTATTGCTGTCTGGGTATAGTCATGTTGTAGTTCAACTGCTGAAATTGAAAATAAAGTGACAAAAGTGCAACCTCCTGGTGGCTTCCTCCATTTCTACAAAGTAGAGGCTCAGCACAGttttcactGCAAATGTTAATGAGGAAGAGTGACAGTAAATGATCAACCTTACTACGACTCTGTTTTCATTGGCTACGGTTTAACTTGGTGTTTAGTCAGAGTTTCAACACACTGCACAAGAACACTACagtgccacttgggggccgtggagatggcttgaagatctcatatggggagttgtactgtgatggcttgggactgcgattgctgtagtggct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390904 False 859 lncRNA 0.39 2 10179208 10180313
XR_003404158.2 True 2120 lncRNA 0.40 3 10179575 10182831

Neighbor

gene id symbol gene type direction distance location
LOC113532851 NA coding downstream 359675 9796334 ~ 9819533 (-)
mppe1 mppe1 coding downstream 461642 9687555 ~ 9717566 (-)
elovl2 elovl2,LOC101268971 coding downstream 607003 9552595 ~ 9572205 (-)
gcm2 gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 coding downstream 669019 9504137 ~ 9510189 (-)
mak mak coding downstream 706796 9451374 ~ 9472412 (-)
LOC113541360 NA coding upstream 102003 10284834 ~ 10284937 (-)
si:dkey-12l12.1 NA coding upstream 792943 10975774 ~ 10980139 (-)
LOC113541107 NA coding upstream 923583 11106414 ~ 11109555 (-)
prlh2 prlh coding upstream 1125923 11308754 ~ 11310736 (-)
zfand1 zfand1,LOC107739158,LOC107681457,LOC107554718 coding upstream 1172341 11355172 ~ 11368763 (-)
G329952 NA non-coding downstream 12604 10166075 ~ 10166604 (-)
G329943 NA non-coding downstream 19225 10159767 ~ 10159983 (-)
G329941 NA non-coding downstream 22923 10155930 ~ 10156285 (-)
G329934 NA non-coding downstream 40251 10138703 ~ 10138957 (-)
LOC117595785 NA non-coding downstream 265635 9912522 ~ 9913573 (-)
G329996 NA non-coding upstream 25750 10208581 ~ 10213864 (-)
G329997 NA non-coding upstream 25908 10208739 ~ 10211577 (-)
G330030 NA non-coding upstream 134762 10317593 ~ 10319393 (-)
G330182 NA non-coding upstream 336034 10518865 ~ 10519397 (-)
G330132 NA non-coding upstream 448329 10631160 ~ 10639145 (-)
LOC113541109 NA other downstream 22408 10151497 ~ 10156800 (-)
sec61b sec61b,LOC102796100 other downstream 2792861 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 3116780 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 3795620 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 4200829 5829474 ~ 5978379 (-)
G330185 NA other upstream 339901 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 740295 10923126 ~ 10930775 (-)
G330379 NA other upstream 899437 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 1761223 11944054 ~ 11996700 (-)
LOC113541288 NA other upstream 2493714 12676545 ~ 12677938 (-)

Expression


Co-expression Network