G330038



Basic Information


Item Value
gene id G330038
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10431333 ~ 10432864 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU390970
actcaaaagtaattggcacaattgactgataagcagttttatGGCCAGCtatggcctgtttccttgttattttaTGACAAATGAAGGAGATAAAGGTCTGGagttccaagtgttgaatttgcatttgctagctgttcatgggaactctcaatatgtggtctaaagaggtgtcgatgcaaataaaggaggccatcattagactgaaaaaacaaaacaggcctatcagagagatagcagaaactttaggagtggccaaatcaacaaatatgctaaaaaaaaagcctcttaaaaaaaaaagtctgcccAGTTCAGgaacaagattaacttgtaccagaatgatgggaagagaagagtatggagtaggaaaggaagggctaatgttccaaaacataccacatcatctgtcaaaaatGGTGgagcagtgttatggcatgggcatgtatggctgccaatggaactgggtcactggtgtttattgatgatgtgactgctgatagaagtagcaggattaATTCTGAAGTGAACAGAGCTATACTTtatgctcagattcagtcaaatgctgcaaaactgataggacggtgCTTTACAGTACAGATATACTGTGCAATAAACATaccgcgaaagcaacccaagagctaagaaattaaatgttcttgaATGTCTGATGACCGCAACCCAGCTGAGCATTTCACTTACTagagacaaaactgaaggcagaaaggcccacaaacaagcagcaactaaaGGTAGCTGTCATAaaggcaaagcatctcaagggaggaaactcagctttcaggcagtcattaactgcaaaggatttgcaaccatgtattaaatataatcctTATAATTAAGTTACTTTtgtgcctgtgaaaatggagggactctgaaaaaatggctgcaattcctaaacggttaatgcaatatttttgttaaaccccttgaattgaagctgaaagtctacattccAATATCATcttaaaatgatgaaaattgtgacactgtccaaatacttatggacctgactatatgtggcagcctgggaaaacacTTCACATGGTGGAATTTTCTAATTGATATTGCTTGGAAAACGAAGAGGCTTTCCtgcactgaaatatgtttctcttttgtatgtATCTCAGGCAAGTGCAGGAGAGAAACTGAAGTCATTTTAATTAAGATTTTGTTTAACTGTATTTTTAGGTTCAGTGGGGGAATAAATAGTTCAAAGAGAAGGGGTGAGTGACTGTACCAGGGTAGAGGATGGGAAACAGAGTAAATATAGGACAGCAATACATGAAATAGAGAACTGTAAATATGTGTACTTATGTAACTGTCAAGACATGTATGTTTCTAGGTTgtatttcttctattttttttttttaagttggcttctttttttaaagttgacttTTTAATTTATAGTTGACTCTTGATCTGTTCACTCTTTTCacttaattcttttttttatttaaaattgac

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU390970 True 1482 TUCP 0.37 2 10431333 10432864

Neighbor


gene id symbol gene type direction distance location
tmx3b tmx3,LOC107693466 coding upstream 4897 10345323 ~ 10426436 (+)
LOC113541200 dnajc13 coding upstream 89432 10182791 ~ 10341901 (+)
sycp2l sycp2l,LOC108261788 coding upstream 869144 9510608 ~ 9562189 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 979990 9438298 ~ 9451343 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding upstream 1015951 9400242 ~ 9415382 (+)
lztfl1 lztfl1,LOC107701792 coding downstream 8093 10440957 ~ 10477542 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 115864 10548728 ~ 10552018 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding downstream 377742 10810606 ~ 10828391 (+)
pxdc1b pxdc1,LOC103040287,LOC107728142,LOC107554723 coding downstream 408819 10841683 ~ 10860448 (+)
myrip myrip,LOC107724561 coding downstream 689531 11122395 ~ 11308612 (+)
G330040 NA non-coding upstream 57276 10362531 ~ 10374057 (+)
G329976 NA non-coding upstream 151366 10213263 ~ 10279967 (+)
G329975 NA non-coding upstream 218903 10209923 ~ 10212430 (+)
G329964 NA non-coding upstream 244396 10174629 ~ 10186937 (+)
G329949 NA non-coding upstream 267213 10163919 ~ 10164120 (+)
G330049 NA non-coding downstream 20119 10452983 ~ 10454904 (+)
G330052 NA non-coding downstream 50465 10483329 ~ 10483668 (+)
G330056 NA non-coding downstream 87027 10519891 ~ 10520607 (+)
G330059 NA non-coding downstream 100607 10533471 ~ 10533787 (+)
G330063 NA non-coding downstream 142025 10574889 ~ 10575096 (+)
cdh19 LOC108256684 other upstream 492865 9856182 ~ 9938468 (+)
G329779 NA other upstream 638600 9791684 ~ 9792733 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other upstream 743842 9621679 ~ 9687491 (+)
bmp6 bmp6 other upstream 1508540 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 1610022 8768745 ~ 8821311 (+)
gli3 gli3,LOC108444237 other downstream 162266 10595130 ~ 10768360 (+)
acad11 acad11,LOC107715568,LOC104947469 other downstream 441345 10874209 ~ 10984209 (+)
G330257 NA other downstream 540400 10973264 ~ 10974915 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other downstream 1284551 11717415 ~ 11748559 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other downstream 1629468 12062332 ~ 12156787 (+)

Expression



Co-expression Network