G330056


Basic Information

Item Value
gene id G330056
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10519891 ~ 10520607 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390989
aaggtcttttactgctgcacatgatgaaacagaaaggtcatccagagttattatgtaatcagaaagcttacttcgagctgcatgtggtcctagtacaagtacttctgtcttgtcagaattaagtaagagaaagttaataagcatccagtttctaatgtcttttacacattcctcaactttattaagctggtgtctgtcatctggctttgctgaaacatacaactgtgtgtcatcagcgtaacagtggaagctaataccatgcttacgaataattttgcccagaggtagcatatataaagaaaagagcagtgggcctaaaacagagccttgcggaacaccaaactttaccttagcatgagaagagaagtcaccatttacgtttataaactgataacgatcagtcaaataagacctgatccaggaaagggctgttcccttaatgcctactacattttctagtctattgaggagaatagcatgatcaatggtatcaaaagctgcactaaggtcaagcagcaccagcaaggagacacaaccctgatcagaggccagtagtaagtcatttacaacttttaccagtgctgtctctgtgctatgatgaggcctaaatcctgactgatacatttcatgaatgttattcctatgtaagtatgagcatagctgctgtgctacaaccttttcaaggaccttggaaataaagggaggtttgatattggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390989 True 717 lncRNA 0.40 1 10519891 10520607

Neighbor

gene id symbol gene type direction distance location
lztfl1 lztfl1,LOC107701792 coding upstream 42349 10440957 ~ 10477542 (+)
tmx3b tmx3,LOC107693466 coding upstream 93455 10345323 ~ 10426436 (+)
LOC113541200 dnajc13 coding upstream 177990 10182791 ~ 10341901 (+)
sycp2l sycp2l,LOC108261788 coding upstream 957702 9510608 ~ 9562189 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 1068548 9438298 ~ 9451343 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 28121 10548728 ~ 10552018 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding downstream 289999 10810606 ~ 10828391 (+)
pxdc1b pxdc1,LOC103040287,LOC107728142,LOC107554723 coding downstream 321076 10841683 ~ 10860448 (+)
myrip myrip,LOC107724561 coding downstream 601788 11122395 ~ 11308612 (+)
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding downstream 849656 11370263 ~ 11374505 (+)
G330052 NA non-coding upstream 36223 10483329 ~ 10483668 (+)
G330044 NA non-coding upstream 58161 10413181 ~ 10461730 (+)
G330049 NA non-coding upstream 64987 10452983 ~ 10454904 (+)
G330043 NA non-coding upstream 74416 10412777 ~ 10445475 (+)
G330040 NA non-coding upstream 145834 10362531 ~ 10374057 (+)
G330059 NA non-coding downstream 12864 10533471 ~ 10533787 (+)
G330063 NA non-coding downstream 54282 10574889 ~ 10575096 (+)
G330121 NA non-coding downstream 224628 10745235 ~ 10745444 (+)
G330122 NA non-coding downstream 229146 10749753 ~ 10750039 (+)
G330259 NA non-coding downstream 450588 10971195 ~ 10971618 (+)
G330038 NA other upstream 87027 10431333 ~ 10432864 (+)
cdh19 LOC108256684 other upstream 581423 9856182 ~ 9938468 (+)
G329779 NA other upstream 727158 9791684 ~ 9792733 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other upstream 832400 9621679 ~ 9687491 (+)
bmp6 bmp6 other upstream 1597098 8851404 ~ 8922793 (+)
gli3 gli3,LOC108444237 other downstream 74523 10595130 ~ 10768360 (+)
acad11 acad11,LOC107715568,LOC104947469 other downstream 353602 10874209 ~ 10984209 (+)
G330257 NA other downstream 452657 10973264 ~ 10974915 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other downstream 1196808 11717415 ~ 11748559 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other downstream 1541725 12062332 ~ 12156787 (+)

Expression


Co-expression Network