G330230 (gli3,LOC107749627,LOC107554716,LOC107657168)


Basic Information

Item Value
gene id G330230
gene name gli3,LOC107749627,LOC107554716,LOC107657168
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10761945 ~ 10762347 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU391177
TAAAAAGGTACTTATAAGTGCATTTATTAAtgtcagattattttatttcagaaagagtatatgattattttatttcacaaataagTGCATAGGAAATGATTTGAGTGTAAAAAGGGGCTCACCATGGGCTTCTCTGTCTTGATTGACTTGACTTGCAGACATTCATCTTGTTTTGAGGTAGCATGGTTATACTCCCTTTGGTCAGGAAACGCTTCAAAGGGGCGTTGTGATTTTGATGACCTGCCCTGTCCATTGGCTCCAGGTTCGCGGGGATGGGCCGGGGGTCGGGGGTAAACGTCTCCACGCTGTTTCTTAGTCACATGGGCTTCAGGACCATGAACAGTTTTTACATGTTTGCGCAGAGAGCTGGGGTCAGTGTAGCGTTTGGTGCAGCCAGGTATCT

Function

symbol description
gli3 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within regulation of neurogenesis. Located in chromatin. Is expressed in several structures, including brain; ceratohyal cartilage; hindbrain neural tube; neural keel; and neural rod. Human ortholog(s) of this gene implicated in Greig cephalopolysyndactyly syndrome; Pallister-Hall syndrome; anodontia; polydactyly; and syndactyly. Orthologous to human GLI3 (GLI family zinc finger 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU391177 True 403 lncRNA 0.44 1 10761945 10762347

Neighbor

gene id symbol gene type direction distance location
LOC113541360 NA coding downstream 477008 10284834 ~ 10284937 (-)
LOC113532851 NA coding downstream 942412 9796334 ~ 9819533 (-)
mppe1 mppe1 coding downstream 1044379 9687555 ~ 9717566 (-)
elovl2 elovl2,LOC101268971 coding downstream 1189740 9552595 ~ 9572205 (-)
gcm2 gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 coding downstream 1251756 9504137 ~ 9510189 (-)
si:dkey-12l12.1 NA coding upstream 213427 10975774 ~ 10980139 (-)
LOC113541107 NA coding upstream 344067 11106414 ~ 11109555 (-)
prlh2 prlh coding upstream 546407 11308754 ~ 11310736 (-)
zfand1 zfand1,LOC107739158,LOC107681457,LOC107554718 coding upstream 592825 11355172 ~ 11368763 (-)
si:dkey-37o8.1 si:dkey-37o8.1,LOC108256503,LOC108434235,LOC107681461,LOC105019383,LOC103369707 coding upstream 723725 11486072 ~ 11488628 (-)
G330229 NA non-coding downstream 1143 10759997 ~ 10760802 (-)
G330219 NA non-coding downstream 17952 10743431 ~ 10743993 (-)
G330132 NA non-coding downstream 122800 10631160 ~ 10639145 (-)
G330182 NA non-coding downstream 242548 10518865 ~ 10519397 (-)
G330030 NA non-coding downstream 442552 10317593 ~ 10319393 (-)
G330233 gli3 non-coding upstream 1160 10763507 ~ 10763892 (-)
G330232 NA non-coding upstream 2245 10764592 ~ 10766784 (-)
G330274 NA non-coding upstream 19759 10782106 ~ 10819317 (-)
G330277 prpf4b non-coding upstream 48322 10810669 ~ 10812838 (-)
G330278 NA non-coding upstream 69024 10831371 ~ 10831586 (-)
G330185 NA other downstream 238682 10522732 ~ 10523263 (-)
LOC113541109 NA other downstream 605145 10151497 ~ 10156800 (-)
sec61b sec61b,LOC102796100 other downstream 3375598 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 3699517 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 4378357 6256403 ~ 6383588 (-)
ackr4b ackr4 other upstream 160779 10923126 ~ 10930775 (-)
G330379 NA other upstream 319921 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 1181707 11944054 ~ 11996700 (-)
LOC113541288 NA other upstream 1914198 12676545 ~ 12677938 (-)
LOC113541105 NA other upstream 2995311 13757658 ~ 13762615 (-)

Expression


Co-expression Network