G330232


Basic Information

Item Value
gene id G330232
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10764592 ~ 10766784 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU391179
TTTTAAAGAGATGGGAATGATGCTGTAGTCACCAAATCACCTTAAAGAAATATGAAACTGGCTTCTGGATATTCAATTATTccacaaatgaaatgattttatgtatttatatacttacactatatttacatgGTTTCCCCAATCCCCTTCTTTAGGGGGCTAAGACATATACAAATAACAGGTCTATACTTTATTTAACTCCCCCTAACAAACTATGctatataatataaatcaaaGATTTTCTCCTCctaatccatttttttaattacttcagtaaattatttgttttccCCATTCTCATCCACTGAAGTATTATAAAACCTACTGCATAATTGCAAGAAACCTGCTCTCTTCTGCAAGGGTAGTCAGAAGGGAGCTCATGTCGCCAATGGCCATGTTAGTTGTACCAGGAGGCAAGCTTTGAAGTACAGCTGAGAGGTGTGGCGTTGTAAGCCAAGAGGAAGTCTGTGATAAATCATGAAGAACACTAGGACTGATGACATTAGAAACCAAACTGCCCTGGTCAAGGCTATCATCCAGGATGGAAGAAAATCGTAGGCCAACATTATCCCGAACACTGCCATCTGGGCTGCTATCTACTGTGCTGGTCACCTGATCAGCCCCAGGGGACAGTAGATCCTCTAAGGGTCCACATGATACCCCAGTCTCAATTTTAAATGATTCCATTTGGCAGTGCTTTTGAAAGACTTGCTGTTGCTGCATGGAAGAGTATGAGTTTGGTTGAAGCTGATCTTCTATTTCTTCTTTTAGTTCTGAAACTTGATTAGCAAGTGAGCAGTTAGTGATATTTCCTTTTGTAAAACTTTGGTAGGATTGTGCATTGTGACTACTGATGATCTGTTGGGTGGAATATAGTTGTGGTTGAGAGGGGTCTTGATCCACAGGCTGGCTAACCATTGCACACTGGGATTGAAGAGAGAGTACAAAGACATGGGATAAACTGGACTTTACTGTTCCTTGCTTGAGCGAGTTTCCACTTGTTTGACATGGAATTTCATGGCTCTGTTGAAGCTGTTGAGTTTGTGACTGACTGGCTTGATGAGGGCCCAGGGCATTCTGACAGTTTTGCTGACCAAAGTTATATGTGCTTGAGCTGTTCCTCCTTGTGACATTGCAGTTCTGTTGTGTAGTCTCCACCGACACACCCTGTCTCATTCTGCAAGATAGCTGTTGGCTTGAATTTGATCCATGCCTGTGTTGATTTGGGTAATTGTGTCCATTGGTCAGTTCAGTTATTTGCTGAACACTACCCCTCTGATTAGGGTGTCGCTGGTCTGTAAGGTATGAAGGGAGCTGCTGTTGTACAATCATATTTTCAAAACGACCAAATGGAAGGCCTACTGCATTAATTTGGTTTGGCAACTGCTCACACCTCAGTGGCTCCCGAGGAGGTAAAAAATCAGTACTTCCTGAGCTTACCTCATTCCACTGGATTGGTAGGCTATCTTTCCTGGGCCTTTGTGCTTCTTGGGCCCCATGATGCTGTGAAGGATTCTGGACGTTTTGCACCTCCTCACTATTCTGGGCAAAATAATTTCTGTGAAATTGGgaatttttgccattttgctgGCTGCAGGAAGCTTCATGGTCCTCAGCAAGAACATCATCATCCCTAAATAAGAGAGCCCCATCATGCTCCATTGCTAAAGCTTCAAGTGCTGTTTGTTCCATGATGCTAGGAGAGAAAGGGGAGAGCTGGCCACTCTGCATATTGCCCTCTAAGTTGGTGTAGTTTTGGTGGTTTGTACTTTTACCAACACCACCTGGGACATTATTACCAGCCAGAGGGGGTAAGTGGTCCATGTTATTCTGGCTGCCAAAACGCTGTATCTGGATACTTCCAAAGGTATTTTGGTCTCTTGACCTTAGAGGGTCACTTGCTCTTCTGTCACTATTGCCTGGGCCTTCCCCTGGATACAATCCCCTCTGTCTGTACCTAATGTGACTGCTTTGTCCATGAGAACTACTATCACTACTGCAACGTGGTCTGACTAGTGATGGCAATATGAGCTGGTTTGTGCCTTTCATGCCTTTCACATCCCTGGCCATAGTCATTTGAATTTTATAGCTCACTTGTTCCACATTAGGCAAAGGCGTTGGAGGGGGCCCACCAGTTGCAGCTGCATATGTGGCTTTGAGATGATAATGCTGTGCTGGTGTTAGGTTCAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU391179 True 2193 lncRNA 0.43 1 10764592 10766784

Neighbor

gene id symbol gene type direction distance location
LOC113541360 NA coding downstream 479655 10284834 ~ 10284937 (-)
LOC113532851 NA coding downstream 945059 9796334 ~ 9819533 (-)
mppe1 mppe1 coding downstream 1047026 9687555 ~ 9717566 (-)
elovl2 elovl2,LOC101268971 coding downstream 1192387 9552595 ~ 9572205 (-)
gcm2 gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 coding downstream 1254403 9504137 ~ 9510189 (-)
si:dkey-12l12.1 NA coding upstream 208990 10975774 ~ 10980139 (-)
LOC113541107 NA coding upstream 339630 11106414 ~ 11109555 (-)
prlh2 prlh coding upstream 541970 11308754 ~ 11310736 (-)
zfand1 zfand1,LOC107739158,LOC107681457,LOC107554718 coding upstream 588388 11355172 ~ 11368763 (-)
si:dkey-37o8.1 si:dkey-37o8.1,LOC108256503,LOC108434235,LOC107681461,LOC105019383,LOC103369707 coding upstream 719288 11486072 ~ 11488628 (-)
G330233 gli3 non-coding downstream 700 10763507 ~ 10763892 (-)
G330230 gli3,LOC107749627,LOC107554716,LOC107657168 non-coding downstream 2245 10761945 ~ 10762347 (-)
G330229 NA non-coding downstream 3790 10759997 ~ 10760802 (-)
G330219 NA non-coding downstream 20599 10743431 ~ 10743993 (-)
G330132 NA non-coding downstream 125447 10631160 ~ 10639145 (-)
G330274 NA non-coding upstream 15322 10782106 ~ 10819317 (-)
G330277 prpf4b non-coding upstream 43885 10810669 ~ 10812838 (-)
G330278 NA non-coding upstream 64587 10831371 ~ 10831586 (-)
G330287 NA non-coding upstream 69305 10836089 ~ 10836352 (-)
G330289 NA non-coding upstream 72346 10839130 ~ 10839552 (-)
G330185 NA other downstream 241329 10522732 ~ 10523263 (-)
LOC113541109 NA other downstream 607792 10151497 ~ 10156800 (-)
sec61b sec61b,LOC102796100 other downstream 3378245 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 3702164 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 4381004 6256403 ~ 6383588 (-)
ackr4b ackr4 other upstream 156342 10923126 ~ 10930775 (-)
G330379 NA other upstream 315484 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 1177270 11944054 ~ 11996700 (-)
LOC113541288 NA other upstream 1909761 12676545 ~ 12677938 (-)
LOC113541105 NA other upstream 2990874 13757658 ~ 13762615 (-)

Expression


Co-expression Network