G330260


Basic Information

Item Value
gene id G330260
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10986708 ~ 10988052 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU391210
TTGAATGTCAGGGAGAAGGACTACAGAAGAGGGAAAAGGCAATCAGACTGTAGCTTGTCGGAGGGAAGTTTGAAGTCTCTGAGGACAGTGAGGGGGTGCTGTCAGTAGGGAAAAGACTGGGGAGCATATCCATTTCTTCAAGAAAATCTCATAGGGGACCAGGAGAGTGGTAGATGACAATGATGAGAAGGATCGGAGAGGTAACTGTAACTGCATGGAATTCGAAGGAcgagatgttgagatgagacagGGAAGAGGTGTGAAGCAGCATCTCCAAGAAAACACCAAACCTGTACTGCCACCCCTGTCAGTTTCTCatggagtgtgagagaaagcataagcagaggatAGAGCAGCCggtgtagctgagttctgtggagagatcCAGTTCTCAGTTAGTGCCAGAAAGTTGAGAGAGTAATGGGAGGCTAAAGCTGAGATGAAGTCAGCTTTCTTTACAGTTCCAGAGCCCACATagcaacactgacactgagacaaCAGTTAAGGGTAGATAAGGTTACTGGTAGTTTGAGAACTTCTGATGCAGAAGTGGTGGTCTCTCCAAAAGTGGTGGCCACTTGAGACTCTCTCCTTGCTGGTGACCACGTTTTGGAATGAACCCCTGGCTGTGTGAGATCTTTGCTGTCTTCAGGTACAGACCATAAGCCCATCTCTTTCTTTCAATGTATGGGATATGTTTAAGCTCCTCTGGCTCCTAATAGCAAGCAGAATTTGccttacttttaaaaatacagttgaGTGAACACTGGCATGTGTTAGGGGTTGCATACACTAGTCGCTGCTATGAGTGCTGGCGACTAGTCAGGCagcagaaacaaaacaacaaaacagcaaagcagatggtaaagaaagcagctaaaTGTACATTAGTTGTtagtttgaaaatatttcagactagatgaaATCAAATTTCCAGAATTATTTTTTGATGCTTCTGAGTTGAATATAGTTTAAAAATCTTCCAGATGCTGCTGTAGACATCACATTCCCCAACAATCATTAAGCTCGGATTTGATCAGTGAGCTGTAAGAATCCTCACTGCACTCTCAATTATTCAGTGATTTCAGCTGAGCTGCCAGCATGTCCACACGAGTGTGTTTTAAGAACTGTTATATCCTTACATAGTGTAACAGTTGATGATAGATGATACACATCATTtgcaatattgatttttcacTACTCACAATTGaccatttgaaaaaaatcatgcatttacacaagaaatttgatattcatgaaaatcccataaacACTGAagaagttcaattcaattttatttgtatagtacttttaacaatggacattgtcacaaagcagctttaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU391210 True 1345 lncRNA 0.41 1 10986708 10988052

Neighbor

gene id symbol gene type direction distance location
pxdc1b pxdc1,LOC103040287,LOC107728142,LOC107554723 coding upstream 126260 10841683 ~ 10860448 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding upstream 158317 10810606 ~ 10828391 (+)
ccr9b LOC108256084,LOC108442972 coding upstream 434690 10548728 ~ 10552018 (+)
lztfl1 lztfl1,LOC107701792 coding upstream 509166 10440957 ~ 10477542 (+)
tmx3b tmx3,LOC107693466 coding upstream 560272 10345323 ~ 10426436 (+)
myrip myrip,LOC107724561 coding downstream 134343 11122395 ~ 11308612 (+)
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding downstream 382211 11370263 ~ 11374505 (+)
LOC113541334 LOC108256505 coding downstream 390249 11378301 ~ 11382806 (+)
asap1b LOC108256502,LOC108256646,LOC108434233 coding downstream 403257 11391309 ~ 11486305 (+)
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding downstream 500864 11488916 ~ 11553217 (+)
G330259 NA non-coding upstream 15090 10971195 ~ 10971618 (+)
G330122 NA non-coding upstream 236669 10749753 ~ 10750039 (+)
G330121 NA non-coding upstream 241264 10745235 ~ 10745444 (+)
G330063 NA non-coding upstream 411612 10574889 ~ 10575096 (+)
G330059 NA non-coding upstream 452921 10533471 ~ 10533787 (+)
G330350 NA non-coding downstream 5772 10993824 ~ 10994253 (+)
LOC113541116 NA non-coding downstream 9978 10998030 ~ 11001838 (+)
G330457 NA non-coding downstream 366568 11354620 ~ 11355001 (+)
G330616 NA non-coding downstream 395384 11383436 ~ 11383662 (+)
G330856 NA non-coding downstream 838087 11826139 ~ 11826390 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 2499 10874209 ~ 10984209 (+)
G330257 NA other upstream 11793 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 218348 10595130 ~ 10768360 (+)
G330038 NA other upstream 553844 10431333 ~ 10432864 (+)
cdh19 LOC108256684 other upstream 1048240 9856182 ~ 9938468 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other downstream 729363 11717415 ~ 11748559 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other downstream 1074280 12062332 ~ 12156787 (+)
G331263 LOC108256200,LOC100304628 other downstream 1718887 12706939 ~ 12712678 (+)
G331476 NA other downstream 2269842 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 4146301 15134353 ~ 15314968 (+)

Expression


Co-expression Network