G330615 (LOC108256505)


Basic Information

Item Value
gene id G330615
gene name LOC108256505
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 11378340 ~ 11381188 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU391616
ATGGACTCTCCACATCGACAGTCCACACTGAGCTGAAGGAACAGTTCTGTTTGGGTCGAGCTCCAAGCTCACGCTTCTCTTTCACCTCTTTCGGGTTTGAGTTCTCATCAGTAGCTTCAGCTGTAACCTGATTTTGAgctttctcctcctctgtcaTTGGTCTGAAGTGCCCTCCCTCCTCAGCTACCATCTTCTCCACCTTCTCAATCAGCTGTGGAACCTGCGTGTGCTCTCCGAAGGCATCGTTGTTGATAACATGGTATCTCTTCTTGCACTTGTCCAGCACCCACTGCAGTGCACTACCTTGGCGCCGGATATATCTCTCAATTGGCATGTTCTTCAGCACCTCGGCCCACGTAAACACCACCATAGTGTGCCTCCACACAGCCTCACCAAACAGCACCAAGTTCTCCTCGATTCTCGCCCGGTCGGTGTCTGTGAACATGCCTACAGGCACGACAAGCAGGAAAGCATGCGGCCCCGGTGGGCACATACCCAGGCTACGAGCCATCTCCTGTTGATAAGCAGTTGGAGTGGTCTGAGCTGAAAACCAGCCTGGTGTGTCCACAACAGTCAGCTTGCGACCGTGGCGCTCTGTATCGCGCTTCACTGAGAATTCAGATGCTCGTTCCAGCCGAAACTCTTCACGCCCCAGGATAGAGTTTCCAGTCAGGCTTTTCCCAGGCCACCGCCAGCCCAAAAGGATAAGGCGCAGCTCAGAGAGACGGTTGGAAGCAGATaattttttctcctctttgGTGTCAAAATTATCATTTCCTGTaagaaaactgcatttgtgATGCTGAGTGCAAATATGaaggtttttaatcagtttttaatCCAGTTCCTTTTGAAAATCTAATAGTAGCAAGTGGAAGTGATGGGATTGTTTCATAATTACATAGAAAAGTAAtgattaacacttttttttttttactttgttgcCTGCAACTCAAAATGACATGAACACTCAATTGTTAAATCTTCTGCTGCCTCTCTTCCATCCATCAGCAGAAAGGGACCACCGTAGCACCACCACTGACTAGATGTTATATTAGTGGTAGATCATTCTCAGAACTGCAGAGAAACTAAAATGCTAATGAGTTTATCAGATTGAACATCATTACTGGGATGTTTATACACTTCAGTTGAGTCATTGCTAGGTTGGGTTTAAAAACAATTTGTCAGTTTGTCCTTCTGGCAGTTTGTCAAAACAATCAGACAAAGAAGAGTGTCCAATCAGGAGGtatggcaatgctacctgctgtgccactgtgctgcCTTATGGAAAAattgttcttaaaaaaatatctttctaaGAATTAAGAACAGTTTAGGAATTTGACCTTTGGTTTCCTTTTGTTACACATACACAAGGACATGCAAAGAAACTTTTGGACAAAGaatctgtaatatttttttttctgttaattttcaCCAccttgtatatttttaaatggttgatTAAGACTACATCCCCAGGATATGGCAGGTgtacctgattttttttatagttgtCATTATTGtggtaatttattattttattaaggcGTTTTaccttcagttttgccttcagcaagtgaaatgcatactcagttggattcaggtcaggtgactgacttggccattgcaaaacattccacttctttgccttaaaaaagtcttgagttgctttcgaaAGTATGTTTCGAGTCCATCTGCACTTCGAAGTGCCATCCAATGGGTtgtgaagcatttggctgaatctgatgTAATCTAATGTAAACTTTATCTAATGTAAATTTTACACTTCAGAACTCATcttgctgcttttgtcagcagtcataTCATCAATAAGTACAAGGGAACCAGTACCACTggtagccatacatgcccacatTATAAGATGAAGAGGTATACttcggatcatgagcagttccgtcccttttccatactcttctcttcccattatTCTGGTACAAgctgatctttgtctcatctgtccacagGTCCACATGAAAGTACCCTCAAACTAAAGCCTGCACACTGAGCTCCTATTcagtatttaatttcaactccaatacaCTGCTACAATAACAAGAAATATCAACTTCCAAATATTTAtcgacctgactgtatatgaatTCAAAAATACCATGAGTGAAACTGAGCCAAGCACATTAAAGATTCATGAGAGAGAATAATCATTTACAAACAGACGGGTGAAAGGTTAGGAAACTACATTCACTGGCGTCATTTCCCATTAGCTACGAGGAAACAGTGAAATGAAGTAAGCTGTGCTGTTATGACAtcggcacaaaaaaaaaaaattcctaaatTAACGCCTCgatttgtgaataaataaaccatATGCTAAAGACTTGATGTGAAATTTAATGCCGTTTATCTTACTGGGCCAggaatatattatgtataacCGTGTTAGTTATCTGGTAGATGGTAAATGTTTAATTAGCTTCAGTTACGTTTACTCGCAAGTCCAACTCCATGTCGAGAGAGGAAAATATCAGATAACTAACTTATTCTCGctgttttgttaaataaataaaaaataataataaaactataacCTGTGTTTATTAGCCATTTGGCTAAGTTCTGTGTAAAACTGTCAGCTGAAAGTGAAATGTGTCAGTTTCGGTGTCAAACTCACACATAGAAGTATAGAGTTATAGATTTAACACCGAAATGAGCTAATATTATGAAGCAAGTATCTTCCGCACTTACCAGataattcttttaatttgttAGACTCCATCATATTGTTTAAGTTTATTGTTTCTTTATCCTGGATAGAGAGATTTCCTGGTTGATTGGTTGGCAAAGCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU391616 True 2829 lncRNA 0.40 2 11378340 11381188

Neighbor

gene id symbol gene type direction distance location
zfand1 zfand1,LOC107739158,LOC107681457,LOC107554718 coding downstream 9577 11355172 ~ 11368763 (-)
prlh2 prlh coding downstream 67604 11308754 ~ 11310736 (-)
LOC113541107 NA coding downstream 268785 11106414 ~ 11109555 (-)
si:dkey-12l12.1 NA coding downstream 398201 10975774 ~ 10980139 (-)
LOC113541360 NA coding downstream 1093403 10284834 ~ 10284937 (-)
si:dkey-37o8.1 si:dkey-37o8.1,LOC108256503,LOC108434235,LOC107681461,LOC105019383,LOC103369707 coding upstream 104884 11486072 ~ 11488628 (-)
myca myc coding upstream 324393 11705581 ~ 11708414 (-)
LOC113541123 NA coding upstream 364856 11746044 ~ 11767888 (-)
otulina yae1d1 coding upstream 382231 11763419 ~ 11766512 (-)
pou6f2 pou6f2,LOC107691427,LOC107748311,LOC107589952,LOC107718921 coding upstream 401190 11782378 ~ 11875117 (-)
G330610 NA non-coding downstream 7312 11370304 ~ 11371028 (-)
G330608 NA non-coding downstream 23263 11354668 ~ 11355077 (-)
G330598 NA non-coding downstream 57295 11320571 ~ 11321045 (-)
G330345 NA non-coding downstream 392689 10985030 ~ 10985651 (-)
G330344 NA non-coding downstream 395018 10982869 ~ 10983322 (-)
G330697 NA non-coding upstream 143122 11524310 ~ 11554457 (-)
G330773 NA non-coding upstream 289146 11670334 ~ 11670993 (-)
LOC113541298 NA non-coding upstream 290867 11672055 ~ 11677666 (-)
G330801 NA non-coding upstream 314250 11695438 ~ 11704151 (-)
G330870 NA non-coding upstream 335906 11717094 ~ 11717936 (-)
G330379 NA other downstream 295189 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 447565 10923126 ~ 10930775 (-)
G330185 NA other downstream 855077 10522732 ~ 10523263 (-)
LOC113541109 NA other downstream 1221540 10151497 ~ 10156800 (-)
sec61b sec61b,LOC102796100 other downstream 3991993 7378731 ~ 7386347 (-)
cdv3 cdv3 other upstream 562866 11944054 ~ 11996700 (-)
LOC113541288 NA other upstream 1295357 12676545 ~ 12677938 (-)
LOC113541105 NA other upstream 2376470 13757658 ~ 13762615 (-)
LOC113541102 msc other upstream 3551807 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 3581649 14962837 ~ 15065810 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G749834 NA non-coding NC_048572.1 CM023226.2 78528427 ~ 78528683 (+)