G330616


Basic Information

Item Value
gene id G330616
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 11383436 ~ 11383662 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU391617
tttgttttaaagtgtGGTCTGTATTACTAATTTACAGTCACACTGGTATACAATGAGATGACAGCAACAAATTTCCACTTGCTATGTTTCAGAAAATCAGAGAGGAACATTATATACTTATatgaaagagagaagcagaCTCCATATGCATCACACTGTACTGCAAGCACAGTCATGGATGTCACTTACTGCAGCACTCTAaatgagacagatggagaatCTAGGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU391617 True 227 lncRNA 0.37 1 11383436 11383662

Neighbor

gene id symbol gene type direction distance location
LOC113541334 LOC108256505 coding upstream 630 11378301 ~ 11382806 (+)
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding upstream 8931 11370263 ~ 11374505 (+)
myrip myrip,LOC107724561 coding upstream 74824 11122395 ~ 11308612 (+)
pxdc1b pxdc1,LOC103040287,LOC107728142,LOC107554723 coding upstream 522988 10841683 ~ 10860448 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding upstream 555045 10810606 ~ 10828391 (+)
asap1b LOC108256502,LOC108256646,LOC108434233 coding downstream 7647 11391309 ~ 11486305 (+)
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding downstream 105254 11488916 ~ 11553217 (+)
vps41 vps41,LOC107722032,LOC107558337,LOC107748298 coding downstream 517093 11900755 ~ 11943508 (+)
LOC113541340 LOC108256745,LOC108434245 coding downstream 778793 12162455 ~ 12179621 (+)
bcl2a bcl2 coding downstream 798123 12181785 ~ 12234183 (+)
G330457 NA non-coding upstream 28435 11354620 ~ 11355001 (+)
LOC113541116 NA non-coding upstream 381598 10998030 ~ 11001838 (+)
G330350 NA non-coding upstream 389183 10993824 ~ 10994253 (+)
G330260 NA non-coding upstream 395384 10986708 ~ 10988052 (+)
G330259 NA non-coding upstream 411818 10971195 ~ 10971618 (+)
G330856 NA non-coding downstream 442477 11826139 ~ 11826390 (+)
G330869 NA non-coding downstream 490330 11873992 ~ 11874192 (+)
G330908 NA non-coding downstream 512004 11895666 ~ 11895891 (+)
G330911 cdv3 non-coding downstream 560368 11944030 ~ 11946238 (+)
G330962 NA non-coding downstream 640914 12024576 ~ 12034059 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 399227 10874209 ~ 10984209 (+)
G330257 NA other upstream 408521 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 615076 10595130 ~ 10768360 (+)
G330038 NA other upstream 950572 10431333 ~ 10432864 (+)
cdh19 LOC108256684 other upstream 1444968 9856182 ~ 9938468 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other downstream 333753 11717415 ~ 11748559 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other downstream 678670 12062332 ~ 12156787 (+)
G331263 LOC108256200,LOC100304628 other downstream 1323277 12706939 ~ 12712678 (+)
G331476 NA other downstream 1874232 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 3750691 15134353 ~ 15314968 (+)

Expression


Co-expression Network