G330856


Basic Information

Item Value
gene id G330856
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 11826139 ~ 11826390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU391882
GCAGTGGCAGAGGAGGTGTGACTGGCGAGGGTAGGCTGTGTGCTGGTGATTGGTTCTGCTTGTGAGAAGGTGGAGATTGTGAAGGCTGAACTGAACCAAGACTGGAGGAGGTACAAGAGGAAGCGGTGCCTGTCGAAGGACCAGTGGCTTGTAACTTTATTGGAGGAGTCAGTGGATGATGGGATGGCAGCTGATTGAGAGGCTGGAGGTGTGCTGACCCACAATGTTGTTCTCGTTCGCGTTCACGTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU391882 True 252 lncRNA 0.54 1 11826139 11826390

Neighbor

gene id symbol gene type direction distance location
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding upstream 272922 11488916 ~ 11553217 (+)
asap1b LOC108256502,LOC108256646,LOC108434233 coding upstream 339834 11391309 ~ 11486305 (+)
LOC113541334 LOC108256505 coding upstream 443333 11378301 ~ 11382806 (+)
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding upstream 451634 11370263 ~ 11374505 (+)
myrip myrip,LOC107724561 coding upstream 517527 11122395 ~ 11308612 (+)
vps41 vps41,LOC107722032,LOC107558337,LOC107748298 coding downstream 74365 11900755 ~ 11943508 (+)
LOC113541340 LOC108256745,LOC108434245 coding downstream 336065 12162455 ~ 12179621 (+)
bcl2a bcl2 coding downstream 355395 12181785 ~ 12234183 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding downstream 602067 12428457 ~ 12499046 (+)
LOC113541349 LOC108256200 coding downstream 880549 12706939 ~ 12708003 (+)
G330616 NA non-coding upstream 442477 11383436 ~ 11383662 (+)
G330457 NA non-coding upstream 471138 11354620 ~ 11355001 (+)
LOC113541116 NA non-coding upstream 824301 10998030 ~ 11001838 (+)
G330350 NA non-coding upstream 831886 10993824 ~ 10994253 (+)
G330260 NA non-coding upstream 838087 10986708 ~ 10988052 (+)
G330869 NA non-coding downstream 47602 11873992 ~ 11874192 (+)
G330908 NA non-coding downstream 69276 11895666 ~ 11895891 (+)
G330911 cdv3 non-coding downstream 117640 11944030 ~ 11946238 (+)
G330962 NA non-coding downstream 198186 12024576 ~ 12034059 (+)
G330976 NA non-coding downstream 315553 12141943 ~ 12142865 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 77580 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 841930 10874209 ~ 10984209 (+)
G330257 NA other upstream 851224 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 1057779 10595130 ~ 10768360 (+)
G330038 NA other upstream 1393275 10431333 ~ 10432864 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other downstream 235942 12062332 ~ 12156787 (+)
G331263 LOC108256200,LOC100304628 other downstream 880549 12706939 ~ 12712678 (+)
G331476 NA other downstream 1431504 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 3307963 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 3425245 15251635 ~ 15265895 (+)

Expression


Co-expression Network