G330911 (cdv3)


Basic Information

Item Value
gene id G330911
gene name cdv3
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 11944030 ~ 11946238 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU391950
ttcTGACTCAAAGTAGCACAAAGATTCCAGTGAAGACACTTCAGAAGGTTACGCTTTAATTCTGGTTTGCCAATCATGAAATCAGACTTAAAAAGCATACTGAAAAGGgtagaaagagaggaaaagggtGAAAACATTAAATGGAAACAGTTAATCAAAATAGGGTGGGTTTTTTTCTGAACACAGTAAGCCTTGCACCAAATTCatttttgcaataaacaatCAGTGCTTAAGCAGAgtccagggaaaaaaaaaaaaattaaactacaaCTGAGCACTACAATCCAGTACAAGGAAGCAGGGAGGTGGTTTTTACTCCTCGAAGTGGTACAATTGAGGCAAGCAGCAGCTTTCCACACACTCAGCACGTATCTCTCCAGAGGATGATAGACATTTCTCTCACtcatatatacttatatatttctAATCACTCTATGCTTTTACTCTTTACAGTAAGGCCACTTTTAATAGAATTGATTCAAATAGCGCAAGCTTTAGAGCTCCAAAAGGAGGAAAGTGGGGGAGAGACAAGAGATTTTCAAGTTTAGGATGAAGTGTTAAGTGCTCCTCTTCAGCTGGGATTGTGACCAGGCCCAAGGACTCTGTCAACAGGGTAACCACAGATCTGCAACTGAGGTAGTCTTACCCTCTCCTCTGGCCTGACCCAAACACTCCCGCTGTACTCGAatcatgaaaagaaaacaacttcACGTTCAGGAGTTCTGTTGATttagcaaagcaaaaaaatagatgtgtgtaatttcaacAGAAGTTCACTTGATCACATGATAAGAGTCCATCCTCAGAGAGGGCTTTCTCAGAGTTCAGCTGATGTCCCATTGCGCAGCTCTCCAACCATCCACTGCTCTGAGTAAATCCACCATCACAGAAGTTTGCTTGTTTCCACTGTCATAAGAAGGAGAATTTTTAAAGTCACTCAGTCCCCTTTGCCGCAGCCCTTTTAGATGTGTTCAATAAGAGAGAACCTTGGCCAGCCAAGTGTGAGTGAAATACTTGAGGGCACTACTGAATGTCtttgtggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagaggaatcgtgtgagagaacagagagcaaaagagaggaAAGAACCATGTAGTATagacacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcatctCCAGCATGATCAGGACTGCATCAGCACAGCGGCGGGTCATCTTGCCCTGTGGTTTGGACTGCACCATTGGTGGTGGGCTGAGGGGTGAGGACATAACGTTGTTTATTTATCCTCCAGAACGGCAAACTGGTTGTCTAACTGTAAATGCTGCACGGCTCCTGGACCTTCCCCTTCTCTGGCACGGCTCTTGTGTTTGACCACTTCGAACGTCTTCTCAATCTCTCTATCcctaaagtgcaaaaaaaACTTGCGAGTCTCCACGTGTTTGGCAGTTGCAAGAAGTGAGGGGAACTGCGCATCACTGAAGATCTCGGGAGGCCCCTGTGATGGCCCTCTTTTTGGAGGACCTAACCGAGCTCCAGGGGGACGATATACACCAGCAGGCTTCGACTCAGGAACCTCTTTCTCCTCTGCAAAATACAAAGGATGACAGTCAACAA

Function

symbol description
cdv3 Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; myotome; and retina. Orthologous to human CDV3 (CDV3 homolog).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU391950 True 1648 lncRNA 0.45 2 11944030 11946238

Neighbor

gene id symbol gene type direction distance location
vps41 vps41,LOC107722032,LOC107558337,LOC107748298 coding upstream 522 11900755 ~ 11943508 (+)
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding upstream 390813 11488916 ~ 11553217 (+)
asap1b LOC108256502,LOC108256646,LOC108434233 coding upstream 457725 11391309 ~ 11486305 (+)
LOC113541334 LOC108256505 coding upstream 561224 11378301 ~ 11382806 (+)
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding upstream 569525 11370263 ~ 11374505 (+)
LOC113541340 LOC108256745,LOC108434245 coding downstream 216217 12162455 ~ 12179621 (+)
bcl2a bcl2 coding downstream 235547 12181785 ~ 12234183 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding downstream 482219 12428457 ~ 12499046 (+)
LOC113541349 LOC108256200 coding downstream 760701 12706939 ~ 12708003 (+)
ccl34b.4 LOC100304628 coding downstream 764388 12710626 ~ 12712651 (+)
G330908 NA non-coding upstream 48139 11895666 ~ 11895891 (+)
G330869 NA non-coding upstream 69838 11873992 ~ 11874192 (+)
G330856 NA non-coding upstream 117640 11826139 ~ 11826390 (+)
G330616 NA non-coding upstream 560368 11383436 ~ 11383662 (+)
G330457 NA non-coding upstream 589029 11354620 ~ 11355001 (+)
G330962 NA non-coding downstream 78338 12024576 ~ 12034059 (+)
G330976 NA non-coding downstream 195705 12141943 ~ 12142865 (+)
G331003 NA non-coding downstream 265012 12211250 ~ 12273290 (+)
G331161 NA non-coding downstream 502524 12448762 ~ 12450347 (+)
G331277 NA non-coding downstream 786571 12732809 ~ 12733703 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 195471 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 959821 10874209 ~ 10984209 (+)
G330257 NA other upstream 969115 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 1175670 10595130 ~ 10768360 (+)
G330038 NA other upstream 1511166 10431333 ~ 10432864 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other downstream 116094 12062332 ~ 12156787 (+)
G331263 LOC108256200,LOC100304628 other downstream 760701 12706939 ~ 12712678 (+)
G331476 NA other downstream 1311656 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 3188115 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 3305397 15251635 ~ 15265895 (+)

Expression


Co-expression Network