G330962


Basic Information

Item Value
gene id G330962
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12024576 ~ 12034059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392006
TCTGACGCCAGCAGCACAGCGTCACTGAGCTGTCCTCTCGTGCTGCAGACCCATAAAACCGAGTCTTGTTTTCCGTTATCAGAGATCTGCTGCTGTCATTCCGCGTGCTGTCAGGTCTCCCAATCCAACACACCGCGACAAACCCATTTCCAGTCAGGAATAAGAGTATTTAAGAGGATTTTTGGGGGCTTACCTCTGTGACCGGCGCTTGTGGTGCGGCGGAGTCTCAAAGCGCCACCGCCGACGCCGCCGTTACACCAGTCGCGCGCACCGGATCCTCGCGCGTCACATGAGCGCGCGCTACCGCTCATTCAAGCTCGCTCTTCCGAGACGTTTACCGGAGACTGTGTTTATCATTCCAGCGGCTGGGAGAGCCGGAGAGCGCCGCTTGTGTCGCCCACCTTGATCCGGAACAGCGGGTCGGTGGGCGATGATCAGTGATTCAGTGCAACGGATGTGTCCCCCGAGGCCTTGCGCTTGCGTGAGGGGGTGTTCTGGCATTGGTCCGAGTTTTCAGGAAGCCCGTTCGCCGCTGCTCCGGGAAGATAATATGCATCCATTGGTGGTGAGGGTTCCTGAatggaggaaaaggaaaaagcaaCAGTGAATGTTTTCCATAGACTCTTAAAGCAATAAGGCATGAGAGAGCATACATTACAGTTATTTTAGCATGGGTAAAGGTGTTCTTTGGTAAAACACAAAATGGAGTAAAAACCCCTTACACCCATGATATAAATCACTAACGCACCAAAACAATCTGTTTTATagattgtgcttttttttaaagaataaaaatgtccAGCTAATGGGTAGTTCAACAGCTACTGGATTAGATGCTGATATGTACATTAGGGCTGAATTGCATTAAAGTCAGAGAAACCTGAAAAACTGAAACAAGTCTTGAACAGCTTTGCAGGTTTGTAAACAAGAATAAGACAATACTTGATTTTGATGCAAAGcttagaaataagaaatatgttGCAAATATCCTGGAAACTGCATTCACTATTCTGACCTGCATGAGGTAATCAGCAATGTACTCAGGCCTGAGGCATTTAACTCCATAAGCCATGGCCTCAGTCACATCCACTCTGACATCATTTGGTCCCAGCCGGCTGAAGTCTGCGAAGAGATGAGTGGTTTCCTTATACAGAGAGGGAGATGGGCTTGGCAATACCTGTACACAAATGGAGATATGAACTTTTAGAATGCATta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392006 True 1216 lncRNA 0.48 3 12024576 12034059

Neighbor

gene id symbol gene type direction distance location
vps41 vps41,LOC107722032,LOC107558337,LOC107748298 coding upstream 81068 11900755 ~ 11943508 (+)
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding upstream 471359 11488916 ~ 11553217 (+)
asap1b LOC108256502,LOC108256646,LOC108434233 coding upstream 538271 11391309 ~ 11486305 (+)
LOC113541334 LOC108256505 coding upstream 641770 11378301 ~ 11382806 (+)
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding upstream 650071 11370263 ~ 11374505 (+)
LOC113541340 LOC108256745,LOC108434245 coding downstream 128396 12162455 ~ 12179621 (+)
bcl2a bcl2 coding downstream 147726 12181785 ~ 12234183 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding downstream 394398 12428457 ~ 12499046 (+)
LOC113541349 LOC108256200 coding downstream 672880 12706939 ~ 12708003 (+)
ccl34b.4 LOC100304628 coding downstream 676567 12710626 ~ 12712651 (+)
G330911 cdv3 non-coding upstream 78338 11944030 ~ 11946238 (+)
G330908 NA non-coding upstream 128685 11895666 ~ 11895891 (+)
G330869 NA non-coding upstream 150384 11873992 ~ 11874192 (+)
G330856 NA non-coding upstream 198186 11826139 ~ 11826390 (+)
G330616 NA non-coding upstream 640914 11383436 ~ 11383662 (+)
G330976 NA non-coding downstream 107884 12141943 ~ 12142865 (+)
G331003 NA non-coding downstream 177191 12211250 ~ 12273290 (+)
G331161 NA non-coding downstream 414703 12448762 ~ 12450347 (+)
G331277 NA non-coding downstream 698750 12732809 ~ 12733703 (+)
G331280 NA non-coding downstream 707058 12741117 ~ 12741678 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 276017 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 1040367 10874209 ~ 10984209 (+)
G330257 NA other upstream 1049661 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 1256216 10595130 ~ 10768360 (+)
G330038 NA other upstream 1591712 10431333 ~ 10432864 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other downstream 28273 12062332 ~ 12156787 (+)
G331263 LOC108256200,LOC100304628 other downstream 672880 12706939 ~ 12712678 (+)
G331476 NA other downstream 1223835 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 3100294 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 3217576 15251635 ~ 15265895 (+)

Expression


Co-expression Network