G330976


Basic Information

Item Value
gene id G330976
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12141943 ~ 12142865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392027
GGAAAACATTGTCTGTATTCCTTGAATGCTAATTAACCCACTTAGTAAAAATCATTACGCCAGATTGTGCAGCATTGACCTCACGTCGCTGTGATGTGCAGTAAGTTTAGCCATTGTTACATGACAgttgaaaatgtttgttttatgaaAGTCAATAAGGACTAGGATTTTTAAggtctttgttttgttgttgatgatgtagACATGATTGTTGTTGTCTTCATGTAGACATGAAGTCTGCCGGTCACGGGTACCCGGGCAGCTGCTGTGTCCATCCCACTGCCAGTGTGGTAGTAATGTATGCTGTTACATTCAGTACTGTACGCATAGCAGAGAGAGACTGTTAGACCTGatgagtgattgtgtgtgattatggCATTTTCTTAGTACTGCTAGCACAGTGCagtattattattgatgttcTGCTCTCCAGTGTACATTTCAGACATCAGCAGTTTTATTTGCACGCGTTGCATCAGCGTCTCCCCacagcaagcacacacacacacacacgaacaacGCACTGCTTTGCTGAATTGGTTCCCTAGTGAGAGGCTGTAAACTGAAAGAGCTTACAACTCTGCGCTATGATCATCAGAGTCTCATTCCTGCTTCCCTCCAACCTACTATATATAGTCTGTGTGAAtgtctgtgcctgtgtgtgtatgtgcatgtgggcgtctgtctgtgtgtctctgctgtgtgtgtctctgctgtgtgtgtctctgctgtgtgtgtctctgctgtgtgtgtctctgctgtgtgtgtgtgtgcgcgtttgtgtgcacctgtgtgcatttgtgtgtgtttctctctgtgtgcatttttgtgtgtgtgtgtgtgcacctgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392027 True 852 lncRNA 0.45 2 12141943 12142865

Neighbor

gene id symbol gene type direction distance location
vps41 vps41,LOC107722032,LOC107558337,LOC107748298 coding upstream 198435 11900755 ~ 11943508 (+)
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding upstream 588726 11488916 ~ 11553217 (+)
asap1b LOC108256502,LOC108256646,LOC108434233 coding upstream 655638 11391309 ~ 11486305 (+)
LOC113541334 LOC108256505 coding upstream 759137 11378301 ~ 11382806 (+)
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding upstream 767438 11370263 ~ 11374505 (+)
LOC113541340 LOC108256745,LOC108434245 coding downstream 19590 12162455 ~ 12179621 (+)
bcl2a bcl2 coding downstream 38920 12181785 ~ 12234183 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding downstream 285592 12428457 ~ 12499046 (+)
LOC113541349 LOC108256200 coding downstream 564074 12706939 ~ 12708003 (+)
ccl34b.4 LOC100304628 coding downstream 567761 12710626 ~ 12712651 (+)
G330962 NA non-coding upstream 107884 12024576 ~ 12034059 (+)
G330911 cdv3 non-coding upstream 195705 11944030 ~ 11946238 (+)
G330908 NA non-coding upstream 246052 11895666 ~ 11895891 (+)
G330869 NA non-coding upstream 267751 11873992 ~ 11874192 (+)
G330856 NA non-coding upstream 315553 11826139 ~ 11826390 (+)
G331003 NA non-coding downstream 68385 12211250 ~ 12273290 (+)
G331161 NA non-coding downstream 305897 12448762 ~ 12450347 (+)
G331277 NA non-coding downstream 589944 12732809 ~ 12733703 (+)
G331280 NA non-coding downstream 598252 12741117 ~ 12741678 (+)
LOC113541232 NA non-coding downstream 654496 12797361 ~ 12802125 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 393384 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 1157734 10874209 ~ 10984209 (+)
G330257 NA other upstream 1167028 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 1373583 10595130 ~ 10768360 (+)
G330038 NA other upstream 1709079 10431333 ~ 10432864 (+)
G331263 LOC108256200,LOC100304628 other downstream 564074 12706939 ~ 12712678 (+)
G331476 NA other downstream 1115029 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2991488 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 3108770 15251635 ~ 15265895 (+)
G332636 NA other downstream 3423310 15566175 ~ 15566663 (+)

Expression


Co-expression Network