cdv3 (cdv3)


Basic Information

Item Value
gene id cdv3
gene name cdv3
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 11944054 ~ 11996700 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392077
TAAATCTTTGTGGATCTTATTAAGCAGTCACTCTTAGATCCTACTGGGAATGAGAGCAGCTCCGTGGTTAAAAGTCTGTGTTACTGGTCTGAAGGCTGGGGGTTCAacctgccactgctgggccccttGAGCAAGTCCCTTAATCCTCTATGCTTCAGAgggctctgaccccaacttcctaacaagcagggatatgtgaagaaaagaatttcactgtaatatatatgtaacaaacaaaggctttctttctttctgtttatttctattaaatcccattctctcaccagcctctctctctctctctctctcacacacacacacacacacacacaccccacaaaGACATTCAGTAGTGCCCTCAAGTATTTCACTCACACTTGGCTGGCCAAGGTTCTCTCTTATTGAACACATCTAAAAGGGCTGCGGCAAAGGGGACTGAGTGACTTTAAAAATTCTCCTTCTTATGACAGTGGAAACAAGCAAACTTCTGTGATGGTGGATTTACTCAGAGCAGTGGATGGTTGGAGAGCTGCGCAATGGGACATCAGCTGAACTCTGAGAAAGCCCTCTCTGAGGATGGACTCTTATCATGTGATCAAGTGAACTTCTgttgaaattacacacatctatttttttgctttgctaaATCAACAGAACTCCTGAACGTgaagttgttttcttttcatgatTCGAGTACAGCGGGAGTGTTTGGGTCAGGCCAGAGGAGAGGGTAAGACTACCTCAGTTGCAGATCTGTGGTTACCCTGTTGACAGAGTCCTTGGGCCTGGTCACAATCCCAGCTGAAGAGGAGCACTTAACACTTCATCCTAAACTTGAAAATCTCTTGTCTCTCCCCCACTTTCCTCCTTTTGGAGCTCTAAAGCTTGCGCTATTTGAATCAATTCTATTAAAAGTGGCCTTACTGTAAAGAGTAAAAGCATAGAGTGATTagaaatatataagtatatatgaGTGAGAGAAATGTCTATCATCCTCTGGAGAGATACGTGCTGAGTGTGTGGAAAGCTGCTGCTTGCCTCAATTGTACCACTTCGAGGAGTAAAAACCACCTCCCTGCTTCCTTGTACTGGATTGTAGTGCTCAGttgtagtttaatttttttttttttccctggacTCTGCTTAAGCACTGattgtttattgcaaaaatGAATTTGGTGCAAGGCTTACTGTGTTCAGAAAAAAACCCACCCTATTTTGATTAACTGTTTCCATTTAATGTTTTCacccttttcctctctttctacCC
>TU392078
TAAATCTTTGTGGATCTTATTAAGCAGTCACTCTTAGATCCTACTGGGAATGAGAGCAGCTCCGTGGTTAAAAGTCTGTGTTACTGGTCTGAAGGCTGGGGGTTCAacctgccactgctgggccccttGAGCAAGTCCCTTAATCCTCTATGCTTCAGAgggctctgaccccaacttcctaacaagcagggatatgtgaagaaaagaatttcactgtaatatatatgtaacaaacaaaggctttctttctttctgtttatttctattaaatcccattctctcaccagcctctctctctctctctctctcacacacacacacacacacacaccccacaaaGACATTCAGTAGTGCCCTCAAGTATTTCACTCACACTTGGCTGGCCAAGGTTCTCTCTTATTGAACACATCTAAAAGGGCTGCGGCAAAGGGGACTGAGTGACTTTAAAAATTCTCCTTCTTATGACAGTGGAAACAAGCAAACTTCTGTGATGGTGGATTTACTCAGAGCAGTGGATGGTTGGAGAGCTGCGCAATGGGACATCAGCTGAACTCTGAGAAAGCCCTCTCTGAGGATGGACTCTTATCATGTGATCAAGTGAACTTCTgttgaaattacacacatctatttttttgctttgctaaATCAACAGAACTCCTGAACGTgaagttgttttcttttcatgatTCGAGTACAGCGGGAGTGTTTGGGTCAGGCCAGAGGAGAGGGTAAGACTACCTCAGTTGCAGATCTGTGGTTACCCTGTTGACAGAGTCCTTGGGCCTGGTCACAATCCCAGCTGAAGAGGAGCACTTAACACTTCATCCTAAACTTGAAAATCTCTTGTCTCTCCCCCACTTTCCTCCTTTTGGAGCTCTAAAGCTTGCGCTATTTGAATCAATTCTATTAAAAGTGGCCTTACTGTAAAGAGTAAAAGCATAGAGTGATTagaaatatataagtatatatgaGTGAGAGAAATGTCTATCATCCTCTGGAGAGATACGTGCTGAGTGTGTGGAAAGCTGCTGCTTGCCTCAATTGTACCACTTCGAGGAGTAAAAACCACCTCCCTGCTTCCTTGTACTGGATTGTAGTGCTCAGttgtagtttaatttttttttttttccctggacTCTGCTTAAGCACTGattgtttattgcaaaaatGAATTTGGTGCAAGGCTTACTGTGTTCAGAAAAAAACCCACCCTATTTTGATTAACTGTTTCCATTTAATGTTTTCacccttttcctctctttctacCC
>XM_026937979.2
TAATCAGGTTTGGGAAGAAACTCCATCCGGTTGGCTCTCTGGATGAATGGTTTCGTCCAAAACCGTGTACTACCATGCTACATAGTGTGTACCGCACCGTTAGTGTCGTACTGTTTTGGCACCCTCTTTAGTAGGGTAGTGTGCGGTTTTGAACGTGGTTTGAATAACGTGTCAAACAGCAGCGTCAAGTCACACACTTCCAGCTGGTCAATGTGGCGGCAGCAGAAACCCGGGGCGTGTTTCGTGATTTGagttttgacacacacacacgcgcgcggtGCAAAGCTATTTAAAGCTTGTATTCCCTGATGTGTAAATCATTATTTGACAGCTGAAGTTGCTCTGTGAGAATTTAAGTTTACCAGTGAGAATTTCTTCGAGAAAATGGCGGAGGTTGCTACACCCGGCGTGGAAAAGAGCCTCGACGACTTCTTTGCTAAGCGggataaaaagaagaagaaagaaaagggtaAAGGGAAAGAAGCAGGCCCGGTGAGCGCACCGGCCTCGCTGAAGAAGatcaagaaagaaaaggagaagtcGATGAAAAACGAAAACCAAGACGCGACCATTGAGAAGGAGGATGAGGAATGGAAAGAGTTTGAGCAGAAGGAGGTGGACTACAGTGGCCTGAGGCTTCAGGCTCTGCAGATAAGTGAtgaaaaagaggaggaagagtaTGAGAAGGAGGAGGTGGGAGAGGATGGTGAGATCATACTGGTCAGTGGAGATAAAGTGTCTGGCCCTTGGAACAAATCCGGACCTCCTCCACCAGCTGCTCCCGTGGAGGAGAAAGAGGTTCCTGAGTCGAAGCCTGCTGGTGTATATCGTCCCCCTGGAGCTCGGTTAGGTCCTCCAAAAAGAGGGCCATCACAGGGGCCTCCCGAGATCTTCAGTGATGCGCAGTTCCCCTCACTTCTTGCAACTGCCAAACACGTGGAGACTCGCAAgGATAGAGAGATTGAGAAGACGTTCGAAGTGGTCAAACACAAGAGCCGTGCCAGAGAAGGGGAAGGTCCAGGAGCCGTGCAGCATTTACAGTTAGACAACCAGTTTGCCGTTCTGGAGGATAAATAAACAACGTTATGTCCTCACCCCTCAGCCCACCACCAATGGTGCAGTCCAAACCACAGGGCAAGATGACCCGCCGCTGTGCTGATGCAGTCCTGATCATGCTGGagatgcaacacacacacacacacacacacacacacacacacacacacacacacacacttgtgtctATACTACATGGTTCTTtcctctcttttgctctctgttctctcacacgattcctctctctctctctcacacacacacacacacacacacacacacacacaccccacaaaGACATTCAGTAGTGCCCTCAAGTATTTCACTCACACTTGGCTGGCCAAGGTTCTCTCTTATTGAACACATCTAAAAGGGCTGCGGCAAAGGGGACTGAGTGACTTTAAAAATTCTCCTTCTTATGACAGTGGAAACAAGCAAACTTCTGTGATGGTGGATTTACTCAGAGCAGTGGATGGTTGGAGAGCTGCGCAATGGGACATCAGCTGAACTCTGAGAAAGCCCTCTCTGAGGATGGACTCTTATCATGTGATCAAGTGAACTTCTgttgaaattacacacatctatttttttgctttgctaaATCAACAGAACTCCTGAACGTgaagttgttttcttttcatgatTCGAGTACAGCGGGAGTGTTTGGGTCAGGCCAGAGGAGAGGGTAAGACTACCTCAGTTGCAGATCTGTGGTTACCCTGTTGACAGAGTCCTTGGGCCTGGTCACAATCCCAGCTGAAGAGGAGCACTTAACACTTCATCCTAAACTTGAAAATCTCTTGTCTCTCCCCCACTTTCCTCCTTTTGGAGCTCTAAAGCTTGCGCTATTTGAATCAATTCTATTAAAAGTGGCCTTACTGTAAAGAGTAAAAGCATAGAGTGATTagaaatatataagtatatatgaGTGAGAGAAATGTCTATCATCCTCTGGAGAGATACGTGCTGAGTGTGTGGAAAGCTGCTGCTTGCCTCAATTGTACCACTTCGAGGAGTAAAAACCACCTCCCTGCTTCCTTGTACTGGATTGTAGTGCTCAGttgtagtttaatttttttttttttccctggacTCTGCTTAAGCACTGattgtttattgcaaaaatGAATTTGGTGCAAGGCTTACTGTGTTCAGAAAAAAACCCACCCTATTTTGATTAACTGTTTCCATTTAATGTTTTCacccttttcctctctttctacCCTTTTCAGTATGCTTTTTAAGTCTGATTTCATGATTGGCAAACCAGAATTAAAGCGTAACCTTCTGAAGTGTCTTCACTGGAA

Function

symbol description
cdv3 Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; myotome; and retina. Orthologous to human CDV3 (CDV3 homolog).

NR:

description
PREDICTED: protein CDV3 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392077 False 1270 lncRNA 0.42 2 11944136 11996700
TU392078 False 1268 lncRNA 0.42 2 11944136 11996700
XM_026937979.2 True 2363 mRNA 0.46 5 11944054 11951031

Neighbor

gene id symbol gene type direction distance location
pou6f2 pou6f2,LOC107691427,LOC107748311,LOC107589952,LOC107718921 coding downstream 68937 11782378 ~ 11875117 (-)
LOC113541123 NA coding downstream 176166 11746044 ~ 11767888 (-)
otulina yae1d1 coding downstream 177542 11763419 ~ 11766512 (-)
myca myc coding downstream 235640 11705581 ~ 11708414 (-)
si:dkey-37o8.1 si:dkey-37o8.1,LOC108256503,LOC108434235,LOC107681461,LOC105019383,LOC103369707 coding downstream 455426 11486072 ~ 11488628 (-)
topbp1 topbp1,LOC107722031 coding upstream 35954 12032654 ~ 12057427 (-)
ek1 ek1,LOC108256132,LOC108434961,LOC107677298,LOC107697673,LOC107729659 coding upstream 573075 12569775 ~ 12654109 (-)
ezh2 ezh2,LOC107727220 coding upstream 1047623 13044323 ~ 13061701 (-)
pdia4 pdia4,LOC107727231,LOC107686698,LOC107741760 coding upstream 1070550 13067250 ~ 13077326 (-)
LOC113541106 NA coding upstream 1083405 13080105 ~ 13129036 (-)
G330870 NA non-coding downstream 226118 11717094 ~ 11717936 (-)
G330801 NA non-coding downstream 239903 11695438 ~ 11704151 (-)
LOC113541298 NA non-coding downstream 266388 11672055 ~ 11677666 (-)
G330773 NA non-coding downstream 273061 11670334 ~ 11670993 (-)
G330697 NA non-coding downstream 389597 11524310 ~ 11554457 (-)
G331090 NA non-coding upstream 65610 12062310 ~ 12066396 (-)
LOC117595757 NA non-coding upstream 91687 12088387 ~ 12124800 (-)
G331122 NA non-coding upstream 152891 12149591 ~ 12150504 (-)
G331123 NA non-coding upstream 154666 12151366 ~ 12154634 (-)
G331142 NA non-coding upstream 217663 12214363 ~ 12215251 (-)
G330379 NA other downstream 860903 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 1013279 10923126 ~ 10930775 (-)
G330185 NA other downstream 1420791 10522732 ~ 10523263 (-)
LOC113541109 NA other downstream 1787254 10151497 ~ 10156800 (-)
sec61b sec61b,LOC102796100 other downstream 4557707 7378731 ~ 7386347 (-)
LOC113541288 NA other upstream 679845 12676545 ~ 12677938 (-)
LOC113541105 NA other upstream 1760958 13757658 ~ 13762615 (-)
LOC113541102 msc other upstream 2936295 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 2966137 14962837 ~ 15065810 (-)
sec61g NA other upstream 3618798 15615498 ~ 15618842 (-)

Expression


Co-expression Network