G331161


Basic Information

Item Value
gene id G331161
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12448762 ~ 12450347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392238
ctcgatgcatgccttccttgtaccctgagagatggtgggatcagtcgagcagtgctagaggatcggagggagcgtggtggcgctcgaggtgtgataagtgctttgagataagtgggtgctggtccgtttttggttttgtaggcaagcatcagtgttttaaatctgatgcgggcagctacaggaagccagtggagggagcgcagcaatggggtggtgtgggaaaatttaggaaggttgaaaaccagtcgtgcagctgcattctggatcagttgcagaggacgaatggtgctcagaggcagacctgccaggagtgagttgcagtagtccagtcttgaaatgacaagggactgaacaagcacctgtgtggcctgtgaagaaagaaatggacgaattcttctgatgttataaaggagaaatcgacatgagcgtatgagattagcaatgtgagaggagaaggacagttgattgtccatggttaccccaaggttgcgtgcagtaactgaagacgagatcagagaattattactacaattaattattattaattattattagatcAGAATTTATTACTGAAAGCACTGATGGCATCCCAGAATTTAAATCATCAAGACGATGATGTaacttttttgcatttatttaaggTTTTGATACTCTCCCCCTTGTGCTGTTAGTTTCGGCAGATGTGAACATAAATAATTGTGATCGAGTGTGGGCCAAAACAAAATGCCTGAGAGCATCTGAGCAAGGTGGTCTCGGACCAGTTCCAGCCAAACTCTAGCATGGTTCAAGTGCAGTGGGAAAGTGATTTGCCCCTGCACTGACATGAAGTGCGTATTGTGTAATTTGGGTTGAAGATAGCATTTCTGGAgatgagccaaaggacagaacTGAAGAGCTGCAAGGATACCATGTGTTCTGCGTATTAATTCCACggaacaaagagagaaaataaacagtggaTGCATACCTAGATTTTTCCAAATTagttatttaaaacatttggtatgtatgtttaaatatatacataatgcTGTTATACGTGTACTGCGACTATAACGCATACTGCCATTTCCCATCACCTGCCGCACTATACACACACGGCGAAGCTGTCATATAACTCTCCTATTAGCACAACACGCAGTCACCTTGTAATTAACCATattgagagaaaatgaagacTCTAACCAGACTCGAATGATGTCTTTTACATGGGACAGCTTTGTGGTCTGACAAAAGATCTGACTTGCAGACCTTTTATTAAGGTGTGTTAGAAGAGCATAATAATCCTATACTTCTGTTTCCCTGTATTATTGCAGTTAACTAACACAGTAACTCaccatatgttattatattacattagctCGCACTTTTTAGGCTAGTTAGTTTCCAGGGAACTCAAACATGGGACTAAAcaacacactggagcttttactcgCCCAATGGGATAggtaataaatttatgatttgtccatgCTTGCCATATGTAGGAATGTTGCTTTCTTTGAGACATGTAAAGCTGTCACACCTTTTTGgcctgag

Function

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko04668 TNF signaling pathway
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU392238 True 1539 lncRNA 0.42 2 12448762 12450347

Neighbor

gene id symbol gene type direction distance location
bcl2a bcl2 coding upstream 214579 12181785 ~ 12234183 (+)
LOC113541340 LOC108256745,LOC108434245 coding upstream 269141 12162455 ~ 12179621 (+)
vps41 vps41,LOC107722032,LOC107558337,LOC107748298 coding upstream 505254 11900755 ~ 11943508 (+)
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding upstream 895545 11488916 ~ 11553217 (+)
asap1b LOC108256502,LOC108256646,LOC108434233 coding upstream 962457 11391309 ~ 11486305 (+)
LOC113541349 LOC108256200 coding downstream 256592 12706939 ~ 12708003 (+)
ccl34b.4 LOC100304628 coding downstream 260279 12710626 ~ 12712651 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding downstream 316213 12766560 ~ 13015109 (+)
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding downstream 570820 13021167 ~ 13042516 (+)
skida1 skida1 coding downstream 824313 13274660 ~ 13278025 (+)
G331003 NA non-coding upstream 175472 12211250 ~ 12273290 (+)
G330976 NA non-coding upstream 305897 12141943 ~ 12142865 (+)
G330962 NA non-coding upstream 414703 12024576 ~ 12034059 (+)
G330911 cdv3 non-coding upstream 502524 11944030 ~ 11946238 (+)
G330908 NA non-coding upstream 552871 11895666 ~ 11895891 (+)
G331277 NA non-coding downstream 282462 12732809 ~ 12733703 (+)
G331280 NA non-coding downstream 290770 12741117 ~ 12741678 (+)
LOC113541232 NA non-coding downstream 347014 12797361 ~ 12802125 (+)
G331342 NA non-coding downstream 593968 13044315 ~ 13049452 (+)
G331343 NA non-coding downstream 600695 13051042 ~ 13051859 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 291975 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 700203 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 1464553 10874209 ~ 10984209 (+)
G330257 NA other upstream 1473847 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 1680402 10595130 ~ 10768360 (+)
G331263 LOC108256200,LOC100304628 other downstream 256592 12706939 ~ 12712678 (+)
G331476 NA other downstream 807547 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2684006 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 2801288 15251635 ~ 15265895 (+)
G332636 NA other downstream 3115828 15566175 ~ 15566663 (+)

Expression


Co-expression Network