G331188


Basic Information

Item Value
gene id G331188
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12501959 ~ 12502302 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392265
cttttttgtgccaaacataccttttggaattatggaattattattctttttggAATTGGtatcatcagaccataacacattttgccacatggtttggggtgattttgttgagcttggatgttttttgtgagaaagggcttccgtctagccaccctaccccatagcccagacatgtgaagaatacaagagattgttgtcacatgcagagagtaatcagtacttgtcagatattcctgctcctttaatgttgccgtaggtctcttggcagcctcacTGGTAAGTTTTGTCTTGTCCTGttgtaaattttggagagaTCTCCTTTCTTTGTGATGTcaccattttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392265 True 344 lncRNA 0.40 1 12501959 12502302

Neighbor

gene id symbol gene type direction distance location
topbp1 topbp1,LOC107722031 coding downstream 444532 12032654 ~ 12057427 (-)
tmem108 LOC107589950 coding downstream 477049 11953616 ~ 12024910 (-)
pou6f2 pou6f2,LOC107691427,LOC107748311,LOC107589952,LOC107718921 coding downstream 626842 11782378 ~ 11875117 (-)
LOC113541123 NA coding downstream 734071 11746044 ~ 11767888 (-)
ek1 ek1,LOC108256132,LOC108434961,LOC107677298,LOC107697673,LOC107729659 coding upstream 67473 12569775 ~ 12654109 (-)
ezh2 ezh2,LOC107727220 coding upstream 542021 13044323 ~ 13061701 (-)
pdia4 pdia4,LOC107727231,LOC107686698,LOC107741760 coding upstream 564948 13067250 ~ 13077326 (-)
LOC113541106 NA coding upstream 577803 13080105 ~ 13129036 (-)
LOC113541320 bmi1,LOC107686702,LOC107727233 coding upstream 637355 13139657 ~ 13152923 (-)
G331142 NA non-coding downstream 286708 12214363 ~ 12215251 (-)
G331123 NA non-coding downstream 347325 12151366 ~ 12154634 (-)
G331122 NA non-coding downstream 351455 12149591 ~ 12150504 (-)
LOC117595757 NA non-coding downstream 377159 12088387 ~ 12124800 (-)
G331090 NA non-coding downstream 435563 12062310 ~ 12066396 (-)
G331274 NA non-coding upstream 189658 12691960 ~ 12693710 (-)
LOC117595777 NA non-coding upstream 507626 13009928 ~ 13021871 (-)
G331415 NA non-coding upstream 510550 13012852 ~ 13018804 (-)
G331423 NA non-coding upstream 563511 13065813 ~ 13066670 (-)
G331516 NA non-coding upstream 659390 13161692 ~ 13198744 (-)
cdv3 cdv3 other downstream 505259 11944054 ~ 11996700 (-)
G330379 NA other downstream 1418808 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 1571184 10923126 ~ 10930775 (-)
G330185 NA other downstream 1978696 10522732 ~ 10523263 (-)
LOC113541109 NA other downstream 2345159 10151497 ~ 10156800 (-)
LOC113541288 NA other upstream 174243 12676545 ~ 12677938 (-)
LOC113541105 NA other upstream 1255356 13757658 ~ 13762615 (-)
LOC113541102 msc other upstream 2430693 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 2460535 14962837 ~ 15065810 (-)
sec61g NA other upstream 3113196 15615498 ~ 15618842 (-)

Expression


Co-expression Network