G331274


Basic Information

Item Value
gene id G331274
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12691960 ~ 12693710 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392354
GGGGTGCCTGCGGTAGGAAGCTTTGaagcatttttttcctgtcctGAGCATGTATAAATTAATACTTGGTGGTCGTTATTGTATTTCACTGATCAGTCTGATACGGATGAAGAGATGAGAACTGCACTGTTGTGTCTATTTGCTGTGCTGCTCACAGCCACCATCTGCAAATCAACTGCAAATCCATGTGTCTGTATCAAGATAGGAAATGTAAGTCTTCCTGCCTCAAGAATAAAAAATTACTATGTGCAGCAATCAGGCCTCTGCCACATTACAGCTGTTGTattcaagACTGTGAAAGGACGTACAGTGTGTGCAGACCCAAAGAATCCCTGGGCTATTAAAGCCATGGAATTAGTGGATGCCAGAAGGAGGACTGGTTCCACAACAGCAAGTCCTGTATCTACTGCCTCTGAGCGCACAGTGATTACAACAGGTGGTTTATACAACATAAGCTAAAGCGCTCCACAGAATCAGAATACCTGTTATTTGTTATGTGTGATCATTGCCTggaatgtatttaatgtttaatctcTGTGGTAGCATAGTCTGAAAGAAGTAGAATACACCTCTGTATTCAGCAGTTGTATGTATTTAGACAATTACTGTCTTGagcattttacacacaattaaaaTGTGCCAGTTGCCGAGAATTCAGCTTTCTGTTGTTGAATGTTCCcctatgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgggtttgggGACGAGAAGGGTGGACTGTGTGAGAACTATTGCCCTGTCACTTTAGGTGGAGTATTTAAACATGGAAGGTTGAGCATAAGTGGAGGTTCAGCACTGAGTAGTACATTGGGGAGCTCCCCAGCATACCCACAATGCTCTCATCCTACTAATCAAGCTCTGTCTCACCTGATGCATATTCATAACAAAAACATCAGACGTACAGTATATGGTAGCTGGTTTCATAAAAGTGGAGTAGTTCCCCGTTCTAATTtttggtgtgaacattaactgaagcgcttgacctgtatctgcatgatttttctttcattgagctgctgccacatgattggctaattagcTAAATGTGCAGTGCAGTTGTAcaaatgttcctaataaagtggatgattggTGTATTTAGATATGTGAATGTCTATTTTGGATCTTCCATGCAAGAAGGACACAATACGTGTTACATAAAAAGAGAATGAATAAAGGAAGAAATGCAAGTTATTGTGAACTTTAGAGCAGACAAAAGCATAGCTAAATTAAGCAGCATCTCAATTTGCA

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002252 immune effector process biological_process
GO:0002253 activation of immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis

RNA

RNA id representative length rna type GC content exon number start site end site
TU392354 True 1279 lncRNA 0.41 3 12691960 12693710

Neighbor

gene id symbol gene type direction distance location
ek1 ek1,LOC108256132,LOC108434961,LOC107677298,LOC107697673,LOC107729659 coding downstream 37851 12569775 ~ 12654109 (-)
topbp1 topbp1,LOC107722031 coding downstream 634533 12032654 ~ 12057427 (-)
tmem108 LOC107589950 coding downstream 667050 11953616 ~ 12024910 (-)
pou6f2 pou6f2,LOC107691427,LOC107748311,LOC107589952,LOC107718921 coding downstream 816843 11782378 ~ 11875117 (-)
LOC113541123 NA coding downstream 924072 11746044 ~ 11767888 (-)
ezh2 ezh2,LOC107727220 coding upstream 350613 13044323 ~ 13061701 (-)
pdia4 pdia4,LOC107727231,LOC107686698,LOC107741760 coding upstream 373540 13067250 ~ 13077326 (-)
LOC113541106 NA coding upstream 386395 13080105 ~ 13129036 (-)
LOC113541320 bmi1,LOC107686702,LOC107727233 coding upstream 445947 13139657 ~ 13152923 (-)
mllt10 mllt10 coding upstream 494199 13187909 ~ 13258145 (-)
G331188 NA non-coding downstream 189658 12501959 ~ 12502302 (-)
G331142 NA non-coding downstream 476709 12214363 ~ 12215251 (-)
G331123 NA non-coding downstream 537326 12151366 ~ 12154634 (-)
G331122 NA non-coding downstream 541456 12149591 ~ 12150504 (-)
LOC117595757 NA non-coding downstream 567160 12088387 ~ 12124800 (-)
LOC117595777 NA non-coding upstream 316218 13009928 ~ 13021871 (-)
G331415 NA non-coding upstream 319142 13012852 ~ 13018804 (-)
G331423 NA non-coding upstream 372103 13065813 ~ 13066670 (-)
G331516 NA non-coding upstream 467982 13161692 ~ 13198744 (-)
G331534 NA non-coding upstream 557303 13251013 ~ 13251562 (-)
LOC113541288 NA other downstream 14022 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 695260 11944054 ~ 11996700 (-)
G330379 NA other downstream 1608809 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 1761185 10923126 ~ 10930775 (-)
G330185 NA other downstream 2168697 10522732 ~ 10523263 (-)
LOC113541105 NA other upstream 1063948 13757658 ~ 13762615 (-)
LOC113541102 msc other upstream 2239285 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 2269127 14962837 ~ 15065810 (-)
sec61g NA other upstream 2921788 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 3587561 16281271 ~ 16312916 (-)

Expression


Co-expression Network