G331277


Basic Information

Item Value
gene id G331277
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12732809 ~ 12733703 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392357
gttggatgcagctgccaataggcccagcagtctctgaaactgctttacagtgagtgaccggcctactttcactctcgcgaccactgtgaggaccgactcgatccgagcaggagacaaacgtgcctgcatcgtggtcgaatcccacacgacgcctagataagcggttctctgagctggagaaagcacgcttttctcggcgtttagtcttaaccccagttccttcatatgggcgagaacggcatctcgatgccgagccgccatctgctctgaatgagctaaaatcaaccagtcgtcgatatagttcagtatgcggatgccccgtagtcgcataggagccagggcagcatccacgcacttcgtgaaggtgcggggtgagagtgctaggccgaagggaagaacccgatactggtaagcttcgcccccgaaagcgaacctcaggaacttcctgagcgggggaaggatggagatgtggaaatacgcatcttttaggtcgatcgtgacgaaccagtcctcggacctgatctgagacacgacctgagtgaccgtaagcatcctgaacttcagtcgagcgactgagaggttcaattgccgcaagtccaaaatgggacgcagccctccccccttcttgggaacaatgaagtaccggctgtagaaccctgactccctgtcgtgaggagggaccacctcgatggcctccttcctcaggagagtacgtacttcctgctccaataccagagcctgctcgggacccaccacagtgggaagaaccccagaaaaacgaggtggaggcgagccgaactgaattcggtagcctctttctacagtacgcaggacccaatgagacacattcggcagaagtttccacgctgccagaaagctcactaagggaatcagc

Function

NR:

description
PREDICTED: protein dispatched homolog 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392357 True 895 lncRNA 0.55 1 12732809 12733703

Neighbor

gene id symbol gene type direction distance location
ccl34b.4 LOC100304628 coding upstream 20158 12710626 ~ 12712651 (+)
LOC113541349 LOC108256200 coding upstream 24806 12706939 ~ 12708003 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding upstream 233763 12428457 ~ 12499046 (+)
bcl2a bcl2 coding upstream 498626 12181785 ~ 12234183 (+)
LOC113541340 LOC108256745,LOC108434245 coding upstream 553188 12162455 ~ 12179621 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding downstream 32857 12766560 ~ 13015109 (+)
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding downstream 287464 13021167 ~ 13042516 (+)
skida1 skida1 coding downstream 540957 13274660 ~ 13278025 (+)
armc3 armc3 coding downstream 588634 13322337 ~ 13334525 (+)
msrb2 msrb2,LOC107735060 coding downstream 602635 13336338 ~ 13341661 (+)
G331161 NA non-coding upstream 282462 12448762 ~ 12450347 (+)
G331003 NA non-coding upstream 459519 12211250 ~ 12273290 (+)
G330976 NA non-coding upstream 589944 12141943 ~ 12142865 (+)
G330962 NA non-coding upstream 698750 12024576 ~ 12034059 (+)
G330911 cdv3 non-coding upstream 786571 11944030 ~ 11946238 (+)
G331280 NA non-coding downstream 7414 12741117 ~ 12741678 (+)
LOC113541232 NA non-coding downstream 63658 12797361 ~ 12802125 (+)
G331342 NA non-coding downstream 310612 13044315 ~ 13049452 (+)
G331343 NA non-coding downstream 317339 13051042 ~ 13051859 (+)
G331344 NA non-coding downstream 320582 13054285 ~ 13054519 (+)
G331263 LOC108256200,LOC100304628 other upstream 20131 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 576022 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 984250 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 1748600 10874209 ~ 10984209 (+)
G330257 NA other upstream 1757894 10973264 ~ 10974915 (+)
G331476 NA other downstream 524191 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2400650 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 2517932 15251635 ~ 15265895 (+)
G332636 NA other downstream 2832472 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 4366461 17100164 ~ 17110027 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G111624 NA non-coding NC_048566.1 CM023220.2 9006265 ~ 9006563 (-)
tiger barb (Puntius tetrazona) G86030 NA non-coding NC_056710.1 CM032079.1 6521826 ~ 6522579 (-)