G331342


Basic Information

Item Value
gene id G331342
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13044315 ~ 13049452 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392425
ATTTGAGCTTattttagttttctttattaCTTTCAACAATATTATCTGTAAACATTACAAATCAGCACCTTGTACAatcagaggcagagagaaacagagtggtCACAAACCCTCAGGGAAAGAAAAACGACTGAAAGACTGAATGTCTCAGGAGAAACATGCTGGTGAGGAGCTATCAAACTCGCACTGAGAAAACCATCAGAATTTTACTTGGCAAATCACAGCaaagtttttaataaattacagaaaagccAAACCTGCTTTCAGAGTCTGCGAATATAAATAGCGACAGTTAAAGATCTTCACATGAAggtgatttgaagctgatctTATTGCTATGGTTTTATCACAACTTCTAATATACAGCTGGACTGCATTTCATGGGTCATCCAACATGTTTGGACATGTTTTAGCTGGAAAATTCCTGCACCTATGGTGTGGTATTTAagtacctatttttttttttttttttatttatacagaacCACCATACAGCGTTGACATCACACCATTGGATTAGCACCATTCACCTTTCATTCTCCAAAAAACAGTTTCCAGTAACCCTTAAAATTAAGGGTTGcataataatcattaatcacttattacactgttacattATTAATTACCATCACTGATCTAGTCCAGAGGGTTTCCAACGTTTTGGAGGCAGGgacattattaaaatgtgtacaataatattctgccTATTTATTAGAggcatagagctttttattcctcagCTTCCTACTGAATAGCACATTAGGTTcaagttgatattatttataggaCTTCTTTTGCTTTTGAATTACTGAGGTTTAAACTAAACCCATTCAATTAAAGTgtccagtcaaacaggctaataaaagcttcataataaatataagaactTTCATAATGGTAGGTTGTCATTTccaacactaaaaaaaaataaaaatcacagaccccctggctatgcaTCTCAGACCGCACTGACAACCTGTATGCTAGTCACTGTTACTACATCTCAGTACAAGCAGTAGATTAAGTATTTACCAATGAAACTAAGAGGGCTATTCCATCAGTTAACAGTGACTTCGTAGCTCATTGCTAAATTTTTAATCTATTACTTTAAATTCCCTAAAGTGATATTGAAATTTTCCTCACATCTcagcagctataaaaaaaaatatctgagcAGAGAAGCAAATGCTAGTGCTAGTCATGCCCTAatgcacagagagaaaaagaacaaatgatATAAACCACTAGCATTCAAACCATCAGGACAAAGAAGTGTCTCTTGCACTGCCTTAGCATTCAGCCATTCTAGCCTAGGCATGTGGTCTGGAGGAAACACTGAAAGGGGGTTGACTAGAGCTTTAAAGAAAAGGTGAACAAGACATCAGTTATATATAAAGTCGATGATTTAAGAgtataataaatcattaatcCATGCTCAAACATAGCAGCCAATttctttgagaaaaaaaaaaatacactgaattATTAGGAAAAGGTTGTTGAGAATAATCGAGCATGTTATCGACTGACTTGTGCTCTTGATtatgtgataataataataataataataataataataataataataaacactgtgccAGTACATATTGGATGACCCAATATTTAACGACAGGAAGACCTTACTGACTGTCCAAACTTTTCCTACCTACAGTGATGGTCTGGCAAAAAGCTGCTCAAAGATGTAGAGATttctaaaataacaaaaacaaacactgaaaagTTCCCTGATTCTGATTTCTACTCCATTTGAAATCTTTGTTCATGCATACAACAAACTCAATACACAATCACCAACATTTTAGGACACCTAAACAATTCAGTGTAATTTCAAGGCACCGCAAGTTAGATACTGTATCTATTcatgtttttgtccttttttttttttttttttaaatacttactttttttcatttattttacagaaactgGATGCATTGGCACTCCAGAAAGTACATGATACCTCTGCAGATGCTTGTGATGACAGACAAGCAGAGAAAGTGACTTTGGTTTTCATATGGATCAAAAACACCTCAACTTGATGAAGACTGTTGTAGCATAGTGAGACTCCGGTTTATTAGGCAGGGCTGATTTATACTGATACATCAAGATGCACATAAGCATATGTGTGAAAGGGTTTATGGGTAATGTGTAGTTTGAAAATGCTGACTACTCGTCGTGTGAATCTGCAGTGCTGGGAGTcaggaacaggaagtgtatCTAGTAGCACTGAGACAAGACTCAAACCAGAAGCAAAGCAGAGCAGTTCGAGGTCGGGTTAACGCGAGGCGTACAACGTTAAACGCACTTGCACCACAATGCTGTTGCATTctcgaatctgactggtcagaagtgggttgattaaatttctataacagcagttcccAGAGCAGtaccagctgtaattcaaatcagagGTATATAAttatgcacttgttctaatacatcatTTCTCTAGTAATGACTCATTAACAGGGACATGCATGGTGATCTCTCCAcaagataataataaacagattattacAGTCATAATAATTTACTGTTGATGCATAATctttaatatggtgaagttttctgtaaggagacattaatgtaacatttaaggaagggtGTCTCACGTTTTGTGACAGTCAGTAGGTGTTTTtttgggaaagtcttcagtacagAGGACTTTacactttccggtttctcggtaacgacTAGCTgtgattttgtcttattactttAACAGGCTGGCAATggtactactgtttatagctgctgtaacataattgataacaggaactaacttatgtGGTTCCACAACAATTGACAAAtaacatgtaaatataaaagattaaatgtacAACGTGCtgcaaaacaattaaaaatgttaattgcTAGCAAACTGCagtggtattagaggaataaaacactctgggatatgctattattggaaaataatcaactccagagTAGTAACAGTAAATCCTCTTTATGTCATGCAGCATTACACCAccccagtgttgattatttcctataacagcacctctcCAAGTGTTGTATATCCTACTTACATGACCATCgacaaattattacaaaataagaTCTGTAACAGTgaatggggttttttttggacatGCACCACTGACCGTGGGTGCACACGCTCAAATGTTTGCAGTTTTGCAAACCCAGTATAAATCAGCCCATATACAGATCtagtacctaataaactggtgCTGAACCTGTGGTTTATTGTCAGTTTGGTCCAAAGGTTGAAAGACATCAACTGCTTgcaatttatataaaaaaaaaaataaaaaaaaacctataataAAAAGTTCGGAACgctggaaaaacaaacagccCATTAGACAGTGACGGATCTCTACTAAACTTGAAGCTGTAAACAAGTGAATATTCAAGTTACTGTCAAAAAGTGAATTCCCAGAGTAAGCCTGTTGGTCATGAAAAATAATGACAGAAAAGACTGAAGTGTAAAAAGTACTAGAAATATCCAAGTAGGCAGATCACCTTGTCCTATAAAAAACAGTATTGAAACGTATTGAAACGGCATGTGGAGAGAAAATTCCTGAAGAGTGTAAGGCATTTGTTCCAGAGGTAGACCGATTCATGGAATTTCCATTTCACGTTCGATGCCCACGTACTTGAGAGCATCGGCTTGACTGTAtctaaaagaaagaagaagggaaaaaaaaaaaaaaacatgcagtgtaaaataatgtataagCTGAGAATGAACAACataaatatattgcatttttttccccccataaaAAGATTTGTTTATGTAGTGTGGTGAGACATTCCATATGCAGGTTTTCACATAAAAGTTTTCTTTCATTGCTTTAAAAGTTAAGAGTCACCGTCATTAGCTTGTGCATGTATTACCAGCATTACTTGAAGAATCGTTAGCCAAGTTACCCAAGTAAATTTCTCtgcaaacattagctagctgtaTTAGCTTGTTGGATTAGCCTATTCAGAGAAGGTTTTTTTAGTTAATGCCTATTGGATGCTACACAAGTTCAAAACCTCAGAACTACTGTACCATTTAATACACAAATTTTCAACAGTATTTTGCTGTTTTACGAACGTTGAAGTGCACACTACACAAGCAATCGCAGATGAGGCTCACATGCTACACAAACTTTTACTTAGAGAGATTCCTCTCTAATTTTAGAAGCACATCTGAAATCCAAATCCTGCATTCTCATGCGAATAAACTTGTGGGCTCTCTACCATGAGACTTCGTCAAGAGTAACTTGTTATGATGGTTGTTTCTGCAACATTTTCtgaagaaataagaaaacaaagagaaataacaaaaatgtggAGGGAAGATTGGTTGGTTGCATTTAGGCAGCAAGGactgtctgttctgcaaagagaactggaggtatagTAAATAGAAATGTTGCTCTTTTGTACTGTTCGTCATCACGAATCATGTGGTGGTCGTTTATATTTctgctgttcctaataaaccGTTTGGGCATGACATGCTAAATAATTTCTTATAGAAGCATTGTTATTGTGCTATATGTAGTGTGCATTCAGCATAAGCAGGCAAGGCAGCACCGTTATATATAAAAGTTCTAATATGTAGATCTATCATTTTAGTGGCACCAGAAATACTCGTTTGGAACATGTGAACAGCTTCCTGCTGAGTGATCACAGAGAGTGTGATAATCATTTTAAGTATCCACGATAGCTGATTGGGACAAGAATAAAAAGCgtaaagaaaaaagtcaaagcTGGCCAACACTTACCTGTAGTCAAAGAAAAGCTCCTCCCCGGTTTGTATGGCTCTCTTGGCAAAAATGCCTATTCGGTGATCCCCATTAACCATCATAACTAAAaagtaaaagggaaaaaaaaaaaacaatgaggcTAGATCAGCTTTACTGTTTACCATCAAAGAAACAGCCAAGACATGCCTGATGTCTTACTTTTGGTTCTTTAATTTCACAAGCACatagcattgtgcaaactgcatgtctaaatcaGCACACACTAGCCTTTAAAACATTTGGCTCAGTATTTTGTACACAAATGGTTCCATAATCAAATTGAAATCATATCATCCACCTCATCCATCACGCTCTACCCAGGTCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392425 True 5138 lncRNA 0.36 1 13044315 13049452

Neighbor

gene id symbol gene type direction distance location
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding upstream 1799 13021167 ~ 13042516 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding upstream 29206 12766560 ~ 13015109 (+)
ccl34b.4 LOC100304628 coding upstream 331664 12710626 ~ 12712651 (+)
LOC113541349 LOC108256200 coding upstream 336312 12706939 ~ 12708003 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding upstream 545269 12428457 ~ 12499046 (+)
skida1 skida1 coding downstream 225208 13274660 ~ 13278025 (+)
armc3 armc3 coding downstream 272885 13322337 ~ 13334525 (+)
msrb2 msrb2,LOC107735060 coding downstream 286886 13336338 ~ 13341661 (+)
c8g NA coding downstream 294294 13343746 ~ 13350216 (+)
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding downstream 324112 13373564 ~ 13379652 (+)
LOC113541232 NA non-coding upstream 242190 12797361 ~ 12802125 (+)
G331280 NA non-coding upstream 302637 12741117 ~ 12741678 (+)
G331277 NA non-coding upstream 310612 12732809 ~ 12733703 (+)
G331161 NA non-coding upstream 593968 12448762 ~ 12450347 (+)
G331003 NA non-coding upstream 771025 12211250 ~ 12273290 (+)
G331343 NA non-coding downstream 1590 13051042 ~ 13051859 (+)
G331344 NA non-coding downstream 4833 13054285 ~ 13054519 (+)
G331345 NA non-coding downstream 7066 13056518 ~ 13057241 (+)
G331348 NA non-coding downstream 11883 13061335 ~ 13061659 (+)
G331349 NA non-coding downstream 15251 13064703 ~ 13065447 (+)
G331263 LOC108256200,LOC100304628 other upstream 331637 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 887528 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1295756 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 2060106 10874209 ~ 10984209 (+)
G331476 NA other downstream 208442 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2084901 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 2202183 15251635 ~ 15265895 (+)
G332636 NA other downstream 2516723 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 4050712 17100164 ~ 17110027 (+)

Expression


Co-expression Network