G331343


Basic Information

Item Value
gene id G331343
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13051042 ~ 13051859 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392426
TCTCTCGTTCTGTTGGTGgagttctttaaaaaataaaaaaataaaaataaaataaaaaacaggagTGACTGGCTAACCTTACCAAGCCACTGAGTGTTAGCCAAAGTCATACAGTCAATAACGAAATCTAGCTAGTGCTGGCTGCCTTTGTGTCTTCCTTCACTTCATTCACTCACAttggtttgctagttataatatGTGCAACATaccagaaaaactgcaaagaacgGTTTTCAAcagaacaagacatggctttACTACGTAACTGTCAACAGCTTCAGATGCATGTTGGAAAGTGCGTGCATTTCATCAGCCATGCCCTTTTATTTATCGCCAAATAACTTCTATAAAACACATCTcttgtaaacaaaaataatgggAGCGATATCAAGGTCAGCTGAACTTCTCAGAACACCATTACCAAAAATAACTTGCGGAAATGTAACTTAAAATCTAAGTTTGGCTCATGTTCCATTCATTAACATGGGAATGGGTGgggttaaaaattgtactgGAGCCGGCCACTATATGGCCGACATCCACCCATATATACGGTCATTGATCTGCACACATACGCCCACACCGCTACAGCACAAGAATCACAAGAGAGTACATCTTAATGGACGAGCAGCTCTGTTCATCCAGGATCAAGCCGTTCTTTTATTGTAACGCTCCATGATGTGCCCATCACTGTTAAGGTTAAAACATAAAACCATTGCAAATGTCCAACAGTAGAGCTTGATTTTAAAAGCGCTCACCTCTCCACAGTATTCCGAGATGAACTCATTCTTCTGAACCGGCTCTTTGATGAAGATGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392426 True 818 lncRNA 0.40 1 13051042 13051859

Neighbor

gene id symbol gene type direction distance location
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding upstream 8526 13021167 ~ 13042516 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding upstream 35933 12766560 ~ 13015109 (+)
ccl34b.4 LOC100304628 coding upstream 338391 12710626 ~ 12712651 (+)
LOC113541349 LOC108256200 coding upstream 343039 12706939 ~ 12708003 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding upstream 551996 12428457 ~ 12499046 (+)
skida1 skida1 coding downstream 222801 13274660 ~ 13278025 (+)
armc3 armc3 coding downstream 270478 13322337 ~ 13334525 (+)
msrb2 msrb2,LOC107735060 coding downstream 284479 13336338 ~ 13341661 (+)
c8g NA coding downstream 291887 13343746 ~ 13350216 (+)
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding downstream 321705 13373564 ~ 13379652 (+)
G331342 NA non-coding upstream 1590 13044315 ~ 13049452 (+)
LOC113541232 NA non-coding upstream 248917 12797361 ~ 12802125 (+)
G331280 NA non-coding upstream 309364 12741117 ~ 12741678 (+)
G331277 NA non-coding upstream 317339 12732809 ~ 12733703 (+)
G331161 NA non-coding upstream 600695 12448762 ~ 12450347 (+)
G331344 NA non-coding downstream 2426 13054285 ~ 13054519 (+)
G331345 NA non-coding downstream 4659 13056518 ~ 13057241 (+)
G331348 NA non-coding downstream 9476 13061335 ~ 13061659 (+)
G331349 NA non-coding downstream 12844 13064703 ~ 13065447 (+)
G331441 NA non-coding downstream 135977 13187836 ~ 13189955 (+)
G331263 LOC108256200,LOC100304628 other upstream 338364 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 894255 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1302483 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 2066833 10874209 ~ 10984209 (+)
G331476 NA other downstream 206035 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2082494 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 2199776 15251635 ~ 15265895 (+)
G332636 NA other downstream 2514316 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 4048305 17100164 ~ 17110027 (+)

Expression


Co-expression Network