G331349


Basic Information

Item Value
gene id G331349
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13064703 ~ 13065447 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392433
tcaggaagggcatccggcataaaaactctgcccaatcaaatatgcagaccaacgatccgctgtggtgacccctaactggagcagccaaaagaagaacaacaacttcATCACAGGCCGGAACATCTCCATGGACAACTTTTTTACAAGTGTTCCACTTGCAGAAGAGCTCCTGGAGAACAACCTAACCCTTGCGGTAAAATAAACCAGACATTTCACCAGTACTCAAGGCCTCCAAAACTCGCCATCTTTACACCACTGAATTTGGCTTCAGGGGTAGCATTACCATGGTCAGCTATGTGCAGAAGAAGGGCAAGGCAATACTTTTGTTGAGCACAATGCACCACAACAAGTCAGTGGATGACAGAGGTGCAAAGAAGAAACCAGAGGCAGTTTTGTACTACAAGGGGGTGTTGATATCATGGATCAGATGATTGGCAACTACACCTCAAAGAGACAAACAAGGAGATGGGCAATGGCTCTTATTTTACAACCTCCTATATCTGGCAGCCCTCAatgcttacacacactttaaagcCCCATGCCCGATGGTTGTTCCTGAAAGAGCTGGCAAAAGATCTCGTCACTCCACAGATCTAGTATCAGCTTCAACAAAATCCCCACCTTCGAAGACATGTCACTGAGGCAATGAAAAAGTGTGGGGTGAATAGAGAAAGACCACAGGAAAGGACAGCTGAAGGCCCAGTAAAAAGGAAGAGGTGCAAACTCTGCCCAACAGTGATAGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392433 True 745 lncRNA 0.46 1 13064703 13065447

Neighbor

gene id symbol gene type direction distance location
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding upstream 22187 13021167 ~ 13042516 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding upstream 49594 12766560 ~ 13015109 (+)
ccl34b.4 LOC100304628 coding upstream 352052 12710626 ~ 12712651 (+)
LOC113541349 LOC108256200 coding upstream 356700 12706939 ~ 12708003 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding upstream 565657 12428457 ~ 12499046 (+)
skida1 skida1 coding downstream 209213 13274660 ~ 13278025 (+)
armc3 armc3 coding downstream 256890 13322337 ~ 13334525 (+)
msrb2 msrb2,LOC107735060 coding downstream 270891 13336338 ~ 13341661 (+)
c8g NA coding downstream 278299 13343746 ~ 13350216 (+)
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding downstream 308117 13373564 ~ 13379652 (+)
G331348 NA non-coding upstream 3044 13061335 ~ 13061659 (+)
G331345 NA non-coding upstream 7462 13056518 ~ 13057241 (+)
G331344 NA non-coding upstream 10184 13054285 ~ 13054519 (+)
G331343 NA non-coding upstream 12844 13051042 ~ 13051859 (+)
G331342 NA non-coding upstream 15251 13044315 ~ 13049452 (+)
G331441 NA non-coding downstream 122389 13187836 ~ 13189955 (+)
LOC117595778 NA non-coding downstream 193009 13258456 ~ 13260558 (+)
G331480 NA non-coding downstream 198902 13264349 ~ 13264586 (+)
G331482 NA non-coding downstream 203980 13269427 ~ 13269642 (+)
G331486 NA non-coding downstream 208296 13273743 ~ 13274041 (+)
G331263 LOC108256200,LOC100304628 other upstream 352025 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 907916 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1316144 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 2080494 10874209 ~ 10984209 (+)
G331476 NA other downstream 192447 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2068906 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 2186188 15251635 ~ 15265895 (+)
G332636 NA other downstream 2500728 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 4034717 17100164 ~ 17110027 (+)

Expression


Co-expression Network