G331496 (eif2s3,LOC102783563)


Basic Information

Item Value
gene id G331496
gene name eif2s3,LOC102783563
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13361369 ~ 13362702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392593
TTTTGATccaaagtgtttttattagtaATCACTGAAATATGTTGACAACTTTTTTCAGCAAACCCAAGAAATACAGCTTTCTTCCCATATCGCAGTGTAAATGAAATCAGTCCTGCCGTTGGGATTGGcgcacattttaaaatacaggtGCTGAGGTGCTGACGTCTGTGCAGCTCCGACCTCGGCACTAGTGTGAAAACGTTTGATATTTATGTCATATGGTGTGATGACACTATCCTCTTATTCCAACTGTAAAATCCTCAATCATCATCCACTGTGGGCGTGATGGTCACTCCTCTCCTGATTTGACCCCAGCCGATTAGaCGCCAGTGTTTCTCCACTCGGCGACTCAGAGCGATCTTCTCGCCCAcctctgtgcacacagggttAGTGAGCACAATTTTGGCCAAATCGGCTTTCACCGCACTCACACGGCCTCCTGTTGACAATGAGCCGATGTTCACCATCAACACCTCATTTTTCGAAAGCTTCTGGACCTGCCGCTTTCTTGTCACCCTCAGTGCGGACACCCAGCAGCCTCCTCAACAGGAAGTAGGAGATCTCGAGCTCGGTGAAAATTTCAGGCAGCGCGCCGACAGCGCCGAGGACCTGACCGACCATACGGTCCGCTCGGCATAGCGTCGGGTCGATTTTAGTGCCCACACCTGcaacacaaacaaatgtatGAATGTAACTGGCCAAAAGAACTGATACCAAATAAAATAAGCTAGGCCTTCTCATCACCAACACGTTTTT

Function

symbol description
eif2s3 Predicted to enable translation initiation factor activity. Predicted to contribute to tRNA binding activity. Predicted to be involved in formation of translation preinitiation complex and positive regulation of translational fidelity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic translation initiation factor 2 complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in MEHMO syndrome. Orthologous to several human genes including EIF2S3 (eukaryotic translation initiation factor 2 subunit gamma).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392593 True 756 lncRNA 0.48 3 13361369 13362702

Neighbor

gene id symbol gene type direction distance location
c8g NA coding upstream 11153 13343746 ~ 13350216 (+)
msrb2 msrb2,LOC107735060 coding upstream 19708 13336338 ~ 13341661 (+)
armc3 armc3 coding upstream 26844 13322337 ~ 13334525 (+)
skida1 skida1 coding upstream 83344 13274660 ~ 13278025 (+)
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding upstream 318853 13021167 ~ 13042516 (+)
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding downstream 10862 13373564 ~ 13379652 (+)
trnat-agu_17 NA coding downstream 22499 13385201 ~ 13385274 (+)
cmbl cmbl coding downstream 23372 13386074 ~ 13396461 (+)
mtrr mtrr coding downstream 43462 13406164 ~ 13447748 (+)
cbln2b cbln2,cbln2b,LOC107657802,LOC107596058,LOC107741967 coding downstream 612538 13975240 ~ 13980189 (+)
G331498 NA non-coding upstream 351 13360280 ~ 13361018 (+)
G331468 NA non-coding upstream 70970 13287447 ~ 13290399 (+)
G331487 NA non-coding upstream 86958 13274127 ~ 13274411 (+)
G331486 NA non-coding upstream 87328 13273743 ~ 13274041 (+)
G331482 NA non-coding upstream 91727 13269427 ~ 13269642 (+)
G331502 NA non-coding downstream 17942 13380644 ~ 13382636 (+)
LOC117595809 NA non-coding downstream 595322 13958024 ~ 13962184 (+)
G332111 NA non-coding downstream 1325461 14688163 ~ 14703270 (+)
G332238 NA non-coding downstream 1582289 14944991 ~ 14945212 (+)
G332248 NA non-coding downstream 1593158 14955860 ~ 14956067 (+)
G331476 NA other upstream 102953 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 648691 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 1204582 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1612810 11717415 ~ 11748559 (+)
G330257 NA other upstream 2386454 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 1771651 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 1888933 15251635 ~ 15265895 (+)
G332636 NA other downstream 2203473 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 3737462 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 3922380 17285082 ~ 17302004 (+)

Expression


Co-expression Network