G331502


Basic Information

Item Value
gene id G331502
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13380644 ~ 13382636 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392599
tattgttttgtacatttgaTTAATAATCACAGAGAGGTCACTTTGGATGAATTTCTCAGGTTAGAATGTGTAGCTGGACAAATTGAGCTGACAGTGCATTGATAACACTcagtattattatcattttcgAGGTGCTGCACAAGGCAGTGTAGCACACTGAGAGGAAAACGCTATCAGCTTTCTTCTGCAAACATGATTTCACAGATGCCGGTGATTGGTTAGTTTTGCTCACTTAGCTCCTGGCCACAAATGGCCGTGGCTATTGTCAGGATTCGAATGTGCGAATAGTGCAAGGCCATAGATGAGAATGTGCAAGGTCAAGCAGATGTGACTTCTGAGAATGTCTCAAGgtaatattcataaatgtttaccATCTTTACTGTCaacattagctagctggctaatatactatatggccaaaaggttgCTAATACCTGACcactcacacccatatgtcctttttgaacatcccattccagatctAGTCCCCTcagtctgcctgcctgtctgtctgtccatctatctatctatccacaagagcatttgtaagggtcaggcactgatgttgggtgaggagacCACTCAAAACTTGGTAAACCATTTcttggacctcactttgtgcatagGGCCATTGACATGCCAGAACATATTTGGGCCTCTTTGTTTCAGcaaagggaaactgtaatgatacagcatacaaagacatcctatacaattgtgtactttCAACCTTGTTGCAACAGGTTGGGAAAggcccacatataggtgtgatgggcatgtgtgcacaaacttgtggccatatagtgtaggacCTAACCTGACAGGACTTCTGGGAGAATTTTTATGTCATGTTGGTAAATGTTTAGAATTAATATTATCTCTAGCTGGCTCACATAATCTAAAACCTATTTGAGTATAATCCTAAAACTACCTTTGAGCACCATGTGCCCACTCAAATACATTGGCAAGGTGTCTTTGAGGGCTCAAAAGATACACACGTGTCTACAAACAGGTTCTTCACATACAGAGCTTTAGTATGTGCAAAGAATTTACAAACAGGTTGTCCACATACAGAGTTTTAGTCACTGAGGCACAGTTATTAATTATGAATGTTTAATTACTGTTTGACAAAATACATGAAAGAAGTCAAATTGTACCTATAGGAAGCTGCCAGATTAAACGGCTTAATGATATTTAGCCTTAAAAGCCTGAACACATCAGAAGAAAGGCAGATCAGTGTACCATCTATCATTATCTATATAAGGTATATTGGCTATTCCACAGTCTTACTTAacgcattgttttttttttgtccagctACACATTATTCATGAGATTGTTCTACCCAGTCAGTTGACTTTCATGTAGTAACACTCAATTCTCATCTTCTCTATTACGCTTTCCATTAGGCATGCGCggttatacaatacaatacattatGATTTTCGACACCTCAAAGGTAGAGCCTGTCTAGATAGGTAGCACCTTGGGCAGCGCTTGTGCTCCTAAGCTAAGCTCTGTCCAATTCAGAAGGCAGCTTTTTCTAAGGCTTCATATTTGCATTTCTTCTTGAAGAAGGCAATCCCATAATAGTAATGTTAATGTATAGTTCTATACGTTATAGACTTTTATAAacctaaattatttattttaatatcagtACATGCCTACCTCGTATCTTTTCCCCCTTGGATTCATTGGCTTTGTACTGATATTATGTATGGTACTGGTTTGAACTTCCTCAAATACTGACTCCCTCATGTCTCTGTCTTGTgggtcatgttttctttttccacaaCCAGCTGTCAGTGTCATGTACATATAGACACCAAACTAAAGCCTGAAAGGGTTTCTGCTGTGCAGCTTAAGGTAAAAAATGCACAGGTCTATCCAATTTAGATTTATCCTTGTCACATATATCCTTCTGCAAAATAATCTGAATAAACAAATccagtttaataaaacataGCCCTGTATCTAAACTGTACTTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392599 True 1993 lncRNA 0.39 1 13380644 13382636

Neighbor

gene id symbol gene type direction distance location
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding upstream 992 13373564 ~ 13379652 (+)
c8g NA coding upstream 30428 13343746 ~ 13350216 (+)
msrb2 msrb2,LOC107735060 coding upstream 38983 13336338 ~ 13341661 (+)
armc3 armc3 coding upstream 46119 13322337 ~ 13334525 (+)
skida1 skida1 coding upstream 102619 13274660 ~ 13278025 (+)
trnat-agu_17 NA coding downstream 2565 13385201 ~ 13385274 (+)
cmbl cmbl coding downstream 3438 13386074 ~ 13396461 (+)
mtrr mtrr coding downstream 23528 13406164 ~ 13447748 (+)
cbln2b cbln2,cbln2b,LOC107657802,LOC107596058,LOC107741967 coding downstream 592604 13975240 ~ 13980189 (+)
rttn rttn coding downstream 851408 14234044 ~ 14295771 (+)
G331496 eif2s3,LOC102783563 non-coding upstream 17942 13361369 ~ 13362702 (+)
G331498 NA non-coding upstream 19626 13360280 ~ 13361018 (+)
G331468 NA non-coding upstream 90245 13287447 ~ 13290399 (+)
G331487 NA non-coding upstream 106233 13274127 ~ 13274411 (+)
G331486 NA non-coding upstream 106603 13273743 ~ 13274041 (+)
LOC117595809 NA non-coding downstream 575388 13958024 ~ 13962184 (+)
G332111 NA non-coding downstream 1305527 14688163 ~ 14703270 (+)
G332238 NA non-coding downstream 1562355 14944991 ~ 14945212 (+)
G332248 NA non-coding downstream 1573224 14955860 ~ 14956067 (+)
G332334 NA non-coding downstream 1683339 15065975 ~ 15113514 (+)
G331476 NA other upstream 122228 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 667966 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 1223857 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1632085 11717415 ~ 11748559 (+)
G330257 NA other upstream 2405729 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 1751717 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 1868999 15251635 ~ 15265895 (+)
G332636 NA other downstream 2183539 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 3717528 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 3902446 17285082 ~ 17302004 (+)

Expression


Co-expression Network