G331516


Basic Information

Item Value
gene id G331516
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13161692 ~ 13198744 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392617
aaaaaaaaaatagtagtctcaggtacaatgtgtgcagttttataaggaaatagctgtaagtgttactgagcatcttgcagaagcagacacagttcttctggagactttgactgtcacactcgcttcttatttctgcagcgaaactcagcagccttcattctgttttttgtctgaaaaatgacTCTTgtgtaatattctgctttctttactgacatacagacatttttctgtaacatttaattgtGTGCTGGTaaaataatgtttggaaatctaaaacgtttttgtactgactcgataatgtagaagtcataaaataaaaatctataacaaagtttgtactaaaaaaataagatgcgtaagacttttgcacagtgctgtgtgttagcATTGTGGAAGTGTGTTTAAGAACTTTTAAAAACCTGTAGGTGGAGAAAGCTGATATTTCCGTTAATTTAATATCAATTTAAAGTCCTTAAATACCTGATTAAGAACTTTCGTTCAGAACATTGTTGTTTCTCTAGAAATGTTGGTTAACGTCTCTGTAATTCTGCATGTTTTAATACTGACAGATGGACAGTTAATCATGTTAAGTGCCATGGCtctcagtttctttctttctgcatgtgtgtgacagGTAGCCTTGCgggagaaaaatgttttgtttagcCAGCTACAGCTGTTGCTCTCCTCGCTCTCTTTCTTCACACAAACccgtgtgtgaagtgtgtacaACATGCGGTCTAAAAGAGTCTATTTCATATTTTGGTTGTGTGTTAATTTAAACCTTTAAGGACATTTTATAGTGACTCTGCCCTTCAATCGGTTTAGAGCATGGTTTTCAGAAATGCCAGCCAATTTGATTGATTTtattgtagggtttttttttgtttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392617 True 903 lncRNA 0.35 2 13161692 13198744

Neighbor

gene id symbol gene type direction distance location
LOC113541320 bmi1,LOC107686702,LOC107727233 coding downstream 8769 13139657 ~ 13152923 (-)
LOC113541106 NA coding downstream 32656 13080105 ~ 13129036 (-)
pdia4 pdia4,LOC107727231,LOC107686698,LOC107741760 coding downstream 84366 13067250 ~ 13077326 (-)
ezh2 ezh2,LOC107727220 coding downstream 99991 13044323 ~ 13061701 (-)
ek1 ek1,LOC108256132,LOC108434961,LOC107677298,LOC107697673,LOC107729659 coding downstream 507583 12569775 ~ 12654109 (-)
pip4k2aa pip4k2a,pip4k2aa,LOC107686705,LOC107695407,LOC107741799,LOC107549201,LOC107595124,LOC107727230 coding upstream 88586 13287330 ~ 13319439 (-)
zfx LOC108256485,LOC108439659 coding upstream 152597 13351341 ~ 13360097 (-)
eif2s3 eif2s3,if2g,LOC106590489,LOC107741782 coding upstream 162625 13361369 ~ 13372043 (-)
cct5 cct5,LOC107686714,LOC107695377 coding upstream 198524 13397268 ~ 13406077 (-)
sema5a sema5a,LOC108426609,LOC106578437 coding upstream 311131 13509875 ~ 13718115 (-)
G331423 NA non-coding downstream 95022 13065813 ~ 13066670 (-)
LOC117595777 NA non-coding downstream 139821 13009928 ~ 13021871 (-)
G331415 NA non-coding downstream 142888 13012852 ~ 13018804 (-)
G331274 NA non-coding downstream 467982 12691960 ~ 12693710 (-)
G331188 NA non-coding downstream 659390 12501959 ~ 12502302 (-)
G331534 NA non-coding upstream 52269 13251013 ~ 13251562 (-)
G331535 NA non-coding upstream 61932 13260676 ~ 13261243 (-)
G331536 NA non-coding upstream 63593 13262337 ~ 13262570 (-)
LOC117595775 NA non-coding upstream 65762 13264506 ~ 13268168 (-)
G331539 NA non-coding upstream 69806 13268550 ~ 13268886 (-)
LOC113541288 NA other downstream 483754 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 1164992 11944054 ~ 11996700 (-)
G330379 NA other downstream 2078541 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 2230917 10923126 ~ 10930775 (-)
G330185 NA other downstream 2638429 10522732 ~ 10523263 (-)
LOC113541105 NA other upstream 558914 13757658 ~ 13762615 (-)
LOC113541102 msc other upstream 1734251 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 1764093 14962837 ~ 15065810 (-)
sec61g NA other upstream 2416754 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 3082527 16281271 ~ 16312916 (-)

Expression


Co-expression Network