G331565


Basic Information

Item Value
gene id G331565
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13380609 ~ 13382435 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU392674
aaaaagaaaacatgacccACAAGACAGAGACATGAGGGAGTCAGTATTTGAGGAAGTTCAAACCAGTACCATACATAATATCAGTACAAAGCCAATGAATCCAAGGGGGAAAAGATACGAGGTAGGCATGTactgatattaaaataaataatttaggtTTATAAAAGTCTATAACGTATAGAACTATACATTAACATTACTATTATGGGATTGCCTTCTTCAAGAAGAAATGCAAATATGAAGCCTTAGAAAAAGCTGCCTTCTGAATTGGACAGAGCTTAGCTTAGGAGCACAAGCGCTGCCCAAGGTGCTACCTATCTAGACAGGCTCTACCTTTGAGGTGTCGAAAATCataatgtattgtattgtataaccGCGCATGCCTAATGGAAAGCGTAATAGAGAAGATGAGAATTGAGTGTTACTACATGAAAGTCAACTGACTGGGTAGAACAATCTCATGAATAATGTGTagctggacaaaaaaaaaacaatgcgtTAAGTAAGACTGTGGAATAGCCAATATACCTTATATAGATAATGATAGATGGTACACTGATCTGCCTTTCTTCTGATGTGTTCAGGCTTTTAAGGCTAAATATCATTAAGCCGTTTAATCTGGCAGCTTCCTATAGGTACAATTTGACTTCTTTCATGTATTTTGTCAAACAGTAATTAAACATTCATAATTAATAACTGTGCCTCAGTGACTAAAACTCTGTATGTGGACAACCTGTTTGTAAATTCTTTGCACATACTAAAGCTCTGTATGTGAAGAACCTGTTTGTAGACACGTGTGTATCTTTTGAGCCCTCAAAGACACCTTGCCAATGTATTTGAGTGGGCACATGGTGCTCAAAGGTAGTTTTAGGATTATACTCAAATAGGTTTTAGATTATGTGAGCCAGCTAGAGATAATATTAATTCTAAACATTTACCAACATGACATAAAAATTCTCCCAGAAGTCCTGTCAGGTTAGgtcctacactatatggccacaagtttgtgcacacatgcccatcacacctatatgtgggccTTTCCCAACCTGTTGCAACAAGGTTGaaagtacacaattgtataggatgtctttgtatgctgtatcattacagtttccctttgCTGAAACAAAGAGGCCCAAATATGTTCTGGCATGTCAATGGCCctatgcacaaagtgaggtccaagAAATGGTTTACCAAGTTTTGAGTGgtctcctcacccaacatcagtgcctgacccttacaaatgctcttgtggatagatagatagatggacagacagacaggcaggcagactgAGGGGACTagatctggaatgggatgttcaaaaaggacatatgggtgtgagtgGTCAGGTATTAGcaaccttttggccatatagtatattagccagctagctaatgttGACAGTAAAGATggtaaacatttatgaatattacCTTGAGACATTCTCAGAAGTCACATCTGCTTGACCTTGCACATTCTCATCTATGGCCTTGCACTATTCGCACATTCGAATCCTGACAATAGCCACGGCCATTTGTGGCCAGGAGCTAAGTGAGCAAAACTAACCAATCACCGGCATCTGTGAAATCATGTTTGCAGAAGAAAGCTGATAGCGTTTTCCTCTCAGTGTGCTACACTGCCTTGTGCAGCACCTcgaaaatgataataatactgAGTGTTATCAATGCACTGTCAGCTCAATTTGTCCAGCTACACATTCTAACCTGAGAAATTCATCCAAAGTGACCTCTCTGTGATTATTAAtcaaatgtacaaaacaatacTATATAAACAGAGGTGGCctttaaatatgtttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392674 True 1827 lncRNA 0.39 1 13380609 13382435

Neighbor

gene id symbol gene type direction distance location
eif2s3 eif2s3,if2g,LOC106590489,LOC107741782 coding downstream 8566 13361369 ~ 13372043 (-)
zfx LOC108256485,LOC108439659 coding downstream 20512 13351341 ~ 13360097 (-)
pip4k2aa pip4k2a,pip4k2aa,LOC107686705,LOC107695407,LOC107741799,LOC107549201,LOC107595124,LOC107727230 coding downstream 61170 13287330 ~ 13319439 (-)
mllt10 mllt10 coding downstream 122464 13187909 ~ 13258145 (-)
LOC113541320 bmi1,LOC107686702,LOC107727233 coding downstream 227686 13139657 ~ 13152923 (-)
cct5 cct5,LOC107686714,LOC107695377 coding upstream 14833 13397268 ~ 13406077 (-)
sema5a sema5a,LOC108426609,LOC106578437 coding upstream 127440 13509875 ~ 13718115 (-)
si:dkey-118j18.2 si:dkey-118j18.2,LOC108256605,LOC106578436 coding upstream 355331 13737766 ~ 13749633 (-)
timm21 timm21,LOC107662560,LOC106590615 coding upstream 366856 13749291 ~ 13754357 (-)
neto1l neto1 coding upstream 383424 13765859 ~ 13867147 (-)
G331560 c8g non-coding downstream 32752 13343614 ~ 13347857 (-)
G331546 NA non-coding downstream 101223 13278136 ~ 13279386 (-)
G331539 NA non-coding downstream 111723 13268550 ~ 13268886 (-)
LOC117595775 NA non-coding downstream 112441 13264506 ~ 13268168 (-)
G331536 NA non-coding downstream 118039 13262337 ~ 13262570 (-)
G331568 NA non-coding upstream 23951 13406386 ~ 13407458 (-)
G331569 mtrr non-coding upstream 30467 13412902 ~ 13413811 (-)
G332056 NA non-coding upstream 1083959 14466394 ~ 14466613 (-)
G332169 NA non-coding upstream 1131300 14513735 ~ 14522615 (-)
G332147 NA non-coding upstream 1154817 14537252 ~ 14564704 (-)
LOC113541288 NA other downstream 702671 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 1383909 11944054 ~ 11996700 (-)
G330379 NA other downstream 2297458 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 2449834 10923126 ~ 10930775 (-)
G330185 NA other downstream 2857346 10522732 ~ 10523263 (-)
LOC113541105 NA other upstream 375223 13757658 ~ 13762615 (-)
LOC113541102 msc other upstream 1550560 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 1580402 14962837 ~ 15065810 (-)
sec61g NA other upstream 2233063 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 2898836 16281271 ~ 16312916 (-)

Expression


Co-expression Network