G332056


Basic Information

Item Value
gene id G332056
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14466394 ~ 14466613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU393198
tgacttgtggccaagtatggtgacccatacttggaatttgtgctctgcatttaacccatccaagtgcacacacacacagtagtgaacacaaacacacaccgtgaacacacacccggagcagtgggcagccttttttgctgtggcgcccggggagcagttgggggttcggtgccttgctcaagggtctcacctcagtcgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU393198 True 200 lncRNA 0.55 2 14466394 14466613

Neighbor

gene id symbol gene type direction distance location
pi15a pi15a,LOC108256124,LOC107758808,LOC107589991,LOC107657806,LOC107689437,LOC107706855 coding downstream 37024 14419894 ~ 14429370 (-)
dok6 dok6,LOC107657792,LOC107596042,LOC107741641,LOC107589921,LOC107689434,LOC107727392 coding downstream 92941 14313082 ~ 14373453 (-)
LOC113541290 socs6,LOC107689432,LOC107596044,LOC107727394 coding downstream 243083 14217138 ~ 14223311 (-)
fbxo15 fbxo15 coding downstream 498042 13954557 ~ 13968352 (-)
neto1l neto1 coding downstream 599247 13765859 ~ 13867147 (-)
gdap1 gdap1,LOC107693809,LOC107589927 coding upstream 9324 14475937 ~ 14482845 (-)
thtpa thtpa coding upstream 69949 14536562 ~ 14540764 (-)
ngdn ngdn coding upstream 112172 14578785 ~ 14586869 (-)
prdm14 prdm14,LOC107683184 coding upstream 151430 14618043 ~ 14629435 (-)
ncoa2 ncoa2 coding upstream 169073 14635686 ~ 14695608 (-)
G331569 mtrr non-coding downstream 1052583 13412902 ~ 13413811 (-)
G331568 NA non-coding downstream 1058936 13406386 ~ 13407458 (-)
G331565 NA non-coding downstream 1083959 13380609 ~ 13382435 (-)
G331560 c8g non-coding downstream 1118537 13343614 ~ 13347857 (-)
G331546 NA non-coding downstream 1187008 13278136 ~ 13279386 (-)
G332169 NA non-coding upstream 47122 14513735 ~ 14522615 (-)
G332147 NA non-coding upstream 70639 14537252 ~ 14564704 (-)
G332164 NA non-coding upstream 77419 14544032 ~ 14634926 (-)
G332196 NA non-coding upstream 247604 14714217 ~ 14797198 (-)
G332580 NA non-coding upstream 878659 15345272 ~ 15397132 (-)
LOC113541105 NA other downstream 703779 13757658 ~ 13762615 (-)
LOC113541288 NA other downstream 1788456 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 2469694 11944054 ~ 11996700 (-)
G330379 NA other downstream 3383243 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 3535619 10923126 ~ 10930775 (-)
LOC113541102 msc other upstream 466382 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 496224 14962837 ~ 15065810 (-)
sec61g NA other upstream 1148885 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 1814658 16281271 ~ 16312916 (-)
oxsr1b oxsr1,oxsr1b other upstream 2363177 16829790 ~ 16879884 (-)

Expression


Co-expression Network