G332111


Basic Information

Item Value
gene id G332111
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14688163 ~ 14703270 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU393268
tgtcaatcacagcaacactagacAATTTTGGCCGCCTGCGAGCTCATGTGTCcggaagagggcagttagtgctttcctcagagtgtgttcagctgccctgtaaTGTAGCACAGGCAGCgctttgaaaagatgtggtggctggcttcacgtttCTATAAGGAAGTATGTGTTAGCCCTTATCCTCCCTgactggtagctgtcatgtaaTCGGGGAGAATTAGCTAGTGGGAGGGAAActgggagaaaatggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcccacttCCTGTGATGAACAGATAGCTCTGTACAATAAGGTATTCAGCACCCAGCTTTAAAAAGGGCGCTGTTTTTGTAAAGTAGCCTCCCTACTGTGCACAAAAGCCTATAGGGCTGTTCCTGAGCCTGTGCACAGCACATTTCCCAGCTCTCCCTATGCGCATTTAGCTCACTGATTTTCTGACAAGCAAACATGTGCCATTAATGGCTTTTACAATACATCAATATATTACAATTGTGAAAAATAGGCAGCAATACTGAGAAGATATACAAATCTATTGTCTGTAAAACATCATAAAGTCTTCTATGGTCCTTTATTTTGGAGCTCTGTTGCAGAGAAGGCAAGTCCTCTCACTGAGGAAATGTTCCAGCGatgtatcatgatatgaaaATACTGGCACATGCTTACTGGTGAGTGTAATCAGGTGTGTGAGAGCTGGGAAATGCTAATCATGTGCAGTgcaatgcaattaaaaaaaaagcaggactGAAGCGCAGAGCTGGGAATGAtcaaggaggagagagagagagggagagagggagaggagggaaGGAGGAATGAACAGCGGGATCTGTTTAGGATGATTTCTCCTTCCTGGCTCTGGGAGAATCTGCTCCGTTGGCACTCAGTGATCCGTTCACGCCGTTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU393268 True 938 lncRNA 0.44 2 14688163 14703270

Neighbor

gene id symbol gene type direction distance location
pabpn1 pabpn1,LOC108256547,LOC107758815,LOC107589928,LOC107596039 coding upstream 110920 14565792 ~ 14577243 (+)
zfhx2 NA coding upstream 123489 14543991 ~ 14564674 (+)
LOC113541072 NA coding upstream 152843 14529664 ~ 14535320 (+)
jph1a LOC108256670 coding upstream 170376 14486970 ~ 14517787 (+)
crispld1a LOC108256732 coding upstream 282401 14386961 ~ 14405762 (+)
xkr9 xkr9 coding downstream 11525 14714795 ~ 14721577 (+)
eya1 eya1,LOC107657823 coding downstream 93374 14796644 ~ 14848084 (+)
trpa1b trpa1 coding downstream 381251 15084521 ~ 15110314 (+)
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding downstream 417956 15121226 ~ 15129603 (+)
si:ch73-173p19.1 LOC108256550 coding downstream 679716 15382986 ~ 15397527 (+)
LOC117595809 NA non-coding upstream 725979 13958024 ~ 13962184 (+)
G331502 NA non-coding upstream 1305527 13380644 ~ 13382636 (+)
G331496 eif2s3,LOC102783563 non-coding upstream 1325461 13361369 ~ 13362702 (+)
G331498 NA non-coding upstream 1327145 13360280 ~ 13361018 (+)
G331468 NA non-coding upstream 1397764 13287447 ~ 13290399 (+)
G332238 NA non-coding downstream 241721 14944991 ~ 14945212 (+)
G332248 NA non-coding downstream 252590 14955860 ~ 14956067 (+)
G332334 NA non-coding downstream 362705 15065975 ~ 15113514 (+)
G332348 NA non-coding downstream 498547 15201817 ~ 15202305 (+)
G332527 NA non-coding downstream 625344 15328614 ~ 15332432 (+)
G331476 NA other upstream 1429747 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 1975485 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 2531376 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 2939604 11717415 ~ 11748559 (+)
G330257 NA other upstream 3713248 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 431083 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 548365 15251635 ~ 15265895 (+)
G332636 NA other downstream 862905 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 2396894 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 2581812 17285082 ~ 17302004 (+)

Expression


Co-expression Network