G332348


Basic Information

Item Value
gene id G332348
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15201817 ~ 15202305 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU393555
CATAAACACACGAGTCATAGCCACACAAAAGTTGAATAGTAGACCAAACCATTGTACAAAATAATGGGGAAATGTTGACCTTCTGCAACATGGAGATAaattaaagaattatagaaATATTGACACTAAATGAAGTCTTACATTTTTTAGCAGTATATATTGTATCATAATATCAAAtacaactacaacaactactacaattactactactactacagctaCTAGTGCTACTTCTACTagtactacaactactactactactattattactactacaactactactacaaccactactacaattactactactactacagctaCTAGTGCTTCTTCTACTagtactacaactactacttctactattattactactactactacaactactacttctactattattactactac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU393555 True 414 lncRNA 0.31 2 15201817 15202305

Neighbor

gene id symbol gene type direction distance location
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding upstream 72214 15121226 ~ 15129603 (+)
trpa1b trpa1 coding upstream 91503 15084521 ~ 15110314 (+)
eya1 eya1,LOC107657823 coding upstream 353733 14796644 ~ 14848084 (+)
xkr9 xkr9 coding upstream 480240 14714795 ~ 14721577 (+)
pabpn1 pabpn1,LOC108256547,LOC107758815,LOC107589928,LOC107596039 coding upstream 624574 14565792 ~ 14577243 (+)
si:ch73-173p19.1 LOC108256550 coding downstream 180681 15382986 ~ 15397527 (+)
tpk1 tpk1 coding downstream 384997 15587302 ~ 15614891 (+)
panx1a panx1 coding downstream 417843 15620148 ~ 15629965 (+)
hephl1a LOC108256642 coding downstream 874586 16076891 ~ 16096771 (+)
LOC113541322 NA coding downstream 998191 16200496 ~ 16219013 (+)
G332334 NA non-coding upstream 88303 15065975 ~ 15113514 (+)
G332248 NA non-coding upstream 245750 14955860 ~ 14956067 (+)
G332238 NA non-coding upstream 256605 14944991 ~ 14945212 (+)
G332111 NA non-coding upstream 498547 14688163 ~ 14703270 (+)
LOC117595809 NA non-coding upstream 1239633 13958024 ~ 13962184 (+)
G332527 NA non-coding downstream 126309 15328614 ~ 15332432 (+)
LOC113541145 NA non-coding downstream 211567 15413872 ~ 15418923 (+)
LOC113541248 NA non-coding downstream 368558 15570863 ~ 15579798 (+)
G332650 NA non-coding downstream 389783 15592088 ~ 15617234 (+)
G332788 NA non-coding downstream 839079 16041384 ~ 16041587 (+)
G331476 NA other upstream 1943401 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 2489139 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 3045030 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 3453258 11717415 ~ 11748559 (+)
G330257 NA other upstream 4226902 10973264 ~ 10974915 (+)
si:ch73-173p19.2 LOC108256301 other downstream 49330 15251635 ~ 15265895 (+)
G332636 NA other downstream 363870 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 1897859 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 2082777 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 2333639 17535944 ~ 17542387 (+)

Expression


Co-expression Network