G332650


Basic Information

Item Value
gene id G332650
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15592088 ~ 15617234 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU393930
ttttttttttttttttttttttttttttacatcatgtggacagccgagtgcgtgtcacttacctggggcaccaggatgcactatgggaagaaggcaagcaggcagaggcagtgtgatgctctgggcaatgttctgctgggaaaccttgggtcctggcattcatgtggatgttactttgacatgtaccacccacctaaacattgttgcagaccaagtatgCTCCTtaatggcaacggtattccttaatagcagtggcctctttcagcaggataatgcgccctgccacactgcaaaaattgtttaggaaaggtttgaggaacatgacaaagagttgaaggtgttgacttggcttccaaattccccagacctcaatccgatcgagcatctgtgggatgtgctggacagaCAAGTCTGGTCCATGGAGGCaccacaacttacaggacttaaacgATCTACTTAAAggaacatcttggtgccagataccacagcacaccttcagaagtcttgtagaatccatgcctcgatgggtcagagctgttttggtggcacaatattttaatgttatgtttaaatgttatggctgattgatgtATATGTGCCTTACGATAACCACAAACCTTGTTAATAAAAGACAATTCACTTTTTCCactgatttattaaaacaaacaaacaaacaaaaaaatatcacaaaacagATCATTCAATCTACAAATTCAGTCCCAGTCCATCATCCAATGCTGTTCCATGCTTCCAAAGAAGTTCAAAATGGAGTTGATTCAACCACCACTGAAAAAGAGGAAAGCAAAAATCAGGTTGACTGATCAGAGTCATGATGCACAACACTTCCACAAGACAGACATTGGAGCAAGAttataccacaaaaaaaaaaaaaatcaccacgCTGCCATGTTAACGCCTTTGCCTTTCTTTGCCTCAGTCAGCTGCAGCTGTGCCACATTTGCTGCTACACACACTAGGACCGGGCAATATGATCATATAATCAATATTATGATAAATTGTATCACAATATACTTTTCagcaatatcacaatatcatcaGTTTTTTTGTGTAACAGTTACTGAATTGAAGCAGCTAACTGATGGTTAACATTTTGTGCTAAAtcttcagtgttaaataatgaaGGATCATCTAATTGCACCGCTGTTTTGCTGGCAGCTTTTGAACAAACCTAttgtaacactttttttttttttttaaatgtagaaatgtcttGTATAAcgatatgatttttttcctacacATAACCCGAccctatgttcacactagcaagcaacaagtTGTTTGTAGTTGGTGTCATGTAGTTGGGCATGCAGCACCTACTATCTCTGTCACTTGTAGGTGTGTACTGTCCAACCTCTTTTGAAACCACagttaaaaaagtaaatgggaactaactgcaTGTAGGAacagtggggaactgaagaaaagtCAGACCACATGCAccataggattggtctgaggCATTACTCAGATTGCTCATTTGCATAgacttgagaaaaaaaatcgagAAAATTTAAGTGTCACTTGTTGCAGGAGActgcgagttcaaatcccaaagGGCTTAAACCTTATAAACGTTATGGCTAAATGGCAGACGTTGGCACCTTTGTTACCTGATCTGCGCACAAGTGGATCAGATAGCACCAGTCCTTCCAATTCAATCTgctgcacacatttttttaaatcgtaCACTATTTGGCCAGAAGTTTGCagacaactgaccatcacacccatatgtggttcttccccaaactttgttgccacaaaattgtaggcacacaactgtctaggatgtctttgtatgctgtagctttaccatttctcttcactggaagtaagaggcccaatcctgttccagcatgacaatgcccctgcacaaagcaagctccaggAAGatatggtgtgtgaaggttggagtggaagaacttgagtgttctgcacagaaccctgacctcagccctactgaacacctttgggctgaactggaacaccgactgcaccccagacctcctcacctaacaatcagtgcctgacctcactaatgctcttgtggctgaatgaacacaaatccccataaccacgctccaaaatctagtggaaagactttgCAGAAGAgtagattattataacagcaaaaagggaactaaatctggaatgggatgttcaacaatcacatatgggtgtgatggtcaggtgtccacaaacttacACCTTATATAGTGTaatccatatagtgtatcttctATCATTTTAACTTGAGCACTGGAACATTACCTGATTACCTGTTTTGATCAAAAGTATTTTCATGTGTATTGttgtgtacctaataaactgctgagtattttaatgca

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009056 catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00500 Starch and sucrose metabolism
ko00710 Carbon fixation in photosynthetic organisms
ko00680 Methane metabolism
ko04922 Glucagon signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU393930 True 2372 lncRNA 0.41 2 15592088 15617234

Neighbor

gene id symbol gene type direction distance location
si:ch73-173p19.1 LOC108256550 coding upstream 194561 15382986 ~ 15397527 (+)
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding upstream 462485 15121226 ~ 15129603 (+)
trpa1b trpa1 coding upstream 481774 15084521 ~ 15110314 (+)
eya1 eya1,LOC107657823 coding upstream 744004 14796644 ~ 14848084 (+)
xkr9 xkr9 coding upstream 870511 14714795 ~ 14721577 (+)
panx1a panx1 coding downstream 2914 15620148 ~ 15629965 (+)
hephl1a LOC108256642 coding downstream 459657 16076891 ~ 16096771 (+)
LOC113541322 NA coding downstream 583262 16200496 ~ 16219013 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281,LOC107695383 coding downstream 709751 16326985 ~ 16443144 (+)
c22h8orf34 c23h8orf34,cunh8orf34,LOC103047203 coding downstream 827429 16444663 ~ 16529117 (+)
LOC113541248 NA non-coding upstream 12290 15570863 ~ 15579798 (+)
LOC113541145 NA non-coding upstream 173165 15413872 ~ 15418923 (+)
G332527 NA non-coding upstream 259656 15328614 ~ 15332432 (+)
G332348 NA non-coding upstream 389783 15201817 ~ 15202305 (+)
G332334 NA non-coding upstream 478574 15065975 ~ 15113514 (+)
G332788 NA non-coding downstream 424150 16041384 ~ 16041587 (+)
G332790 LOC108272979,LOC108266882 non-coding downstream 484516 16101750 ~ 16102212 (+)
G332791 NA non-coding downstream 485037 16102271 ~ 16102597 (+)
G332859 NA non-coding downstream 602319 16219553 ~ 16220945 (+)
G333157 NA non-coding downstream 978547 16595781 ~ 16620089 (+)
G332636 NA other upstream 25425 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 277120 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 326193 15251635 ~ 15265895 (+)
G331476 NA other upstream 2333672 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 2879410 12706939 ~ 12712678 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 1482930 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 1667848 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 1918710 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 2144297 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 2369528 17986762 ~ 17993014 (+)

Expression


Co-expression Network