G332788


Basic Information

Item Value
gene id G332788
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16041384 ~ 16041587 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU394071
gacaacaacaactgtAAGATTATAACTTAAAAGCTTCACTAAAGAGATATGTTTTGAGTAACTtcttaaaacaatcaaaagACGGAGCATTCCTAATAGGAAAAGGCAGAGAATTCCACAAACTCGGAGCAGTACAAGAGAATGATCTCCCACCCATAGTTTTGAGTTTACAGCGAGGCTGGTACAGAGTAAGAGAACCGGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU394071 True 204 lncRNA 0.39 1 16041384 16041587

Neighbor

gene id symbol gene type direction distance location
panx1a panx1 coding upstream 411419 15620148 ~ 15629965 (+)
tpk1 tpk1 coding upstream 426493 15587302 ~ 15614891 (+)
si:ch73-173p19.1 LOC108256550 coding upstream 643857 15382986 ~ 15397527 (+)
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding upstream 911781 15121226 ~ 15129603 (+)
trpa1b trpa1 coding upstream 931070 15084521 ~ 15110314 (+)
hephl1a LOC108256642 coding downstream 35304 16076891 ~ 16096771 (+)
LOC113541322 NA coding downstream 158909 16200496 ~ 16219013 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281,LOC107695383 coding downstream 285398 16326985 ~ 16443144 (+)
c22h8orf34 c23h8orf34,cunh8orf34,LOC103047203 coding downstream 403076 16444663 ~ 16529117 (+)
sulf1 sulf1 coding downstream 496066 16537653 ~ 16632052 (+)
G332650 NA non-coding upstream 424150 15592088 ~ 15617234 (+)
LOC113541248 NA non-coding upstream 461586 15570863 ~ 15579798 (+)
LOC113541145 NA non-coding upstream 622461 15413872 ~ 15418923 (+)
G332527 NA non-coding upstream 708952 15328614 ~ 15332432 (+)
G332348 NA non-coding upstream 839079 15201817 ~ 15202305 (+)
G332790 LOC108272979,LOC108266882 non-coding downstream 60163 16101750 ~ 16102212 (+)
G332791 NA non-coding downstream 60684 16102271 ~ 16102597 (+)
G332859 NA non-coding downstream 177966 16219553 ~ 16220945 (+)
G333157 NA non-coding downstream 554194 16595781 ~ 16620089 (+)
G333148 NA non-coding downstream 563561 16605148 ~ 16633783 (+)
G332636 NA other upstream 474721 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 726416 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 775489 15251635 ~ 15265895 (+)
G331476 NA other upstream 2782968 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 3328706 12706939 ~ 12712678 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 1058577 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 1243495 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 1494357 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 1719944 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 1945175 17986762 ~ 17993014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_00127682_00128077 NA coding CI01000000 null 123554 ~ 128077 (+)