G332790 (LOC108272979,LOC108266882)


Basic Information

Item Value
gene id G332790
gene name LOC108272979,LOC108266882
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16101750 ~ 16102212 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU394073
CCAAGAGTATCCACTGTTTATCGCTTCCTCTCTGTCCACCAGGTCTCCCTCATAAGGCCCAAAGTGAGCACCAACCGGAACAGGCTCTCCTTTATTAAACACTCCCAGTCCTGCGTTGGGAATACCAGACATCTGAACCTCCAGACCAAGGGGCAGGGTTTGTCTGGCTCGCTCAGTGCACCCCATGGGAACAGGAGTATCAGGGATGAAGAGAGCTGGACCATGAAGCTCACATTTGTTGATGAAGAACATTCTGCAGTGCTCACAGactggaaggaaagaaaagaaatgatggctaaataaacaaaatattaaggCTTTTAAGACGTTTACGATTAGTCACTTTTTGAGCATTTCCTATGCTTTTATTGATCAGCGTCTAACCCTAAGAGTGACTGAGTCAAACatgccatgtttgtttttctgaaggACTTACATGATGAACAGtattcattatcatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU394073 True 463 lncRNA 0.44 1 16101750 16102212

Neighbor

gene id symbol gene type direction distance location
hephl1a LOC108256642 coding upstream 4979 16076891 ~ 16096771 (+)
panx1a panx1 coding upstream 471785 15620148 ~ 15629965 (+)
tpk1 tpk1 coding upstream 486859 15587302 ~ 15614891 (+)
si:ch73-173p19.1 LOC108256550 coding upstream 704223 15382986 ~ 15397527 (+)
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding upstream 972147 15121226 ~ 15129603 (+)
LOC113541322 NA coding downstream 98284 16200496 ~ 16219013 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281,LOC107695383 coding downstream 224773 16326985 ~ 16443144 (+)
c22h8orf34 c23h8orf34,cunh8orf34,LOC103047203 coding downstream 342451 16444663 ~ 16529117 (+)
sulf1 sulf1 coding downstream 435441 16537653 ~ 16632052 (+)
LOC113541353 slco5a1,LOC108256392,LOC107741005,LOC107686683,LOC107584939,LOC107695420,LOC107758302 coding downstream 536893 16639105 ~ 16684971 (+)
G332788 NA non-coding upstream 60163 16041384 ~ 16041587 (+)
G332650 NA non-coding upstream 484516 15592088 ~ 15617234 (+)
LOC113541248 NA non-coding upstream 521952 15570863 ~ 15579798 (+)
LOC113541145 NA non-coding upstream 682827 15413872 ~ 15418923 (+)
G332527 NA non-coding upstream 769318 15328614 ~ 15332432 (+)
G332791 NA non-coding downstream 59 16102271 ~ 16102597 (+)
G332859 NA non-coding downstream 117341 16219553 ~ 16220945 (+)
G333157 NA non-coding downstream 493569 16595781 ~ 16620089 (+)
G333148 NA non-coding downstream 502936 16605148 ~ 16633783 (+)
G333232 NA non-coding downstream 630704 16732916 ~ 16829979 (+)
G332636 NA other upstream 535087 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 786782 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 835855 15251635 ~ 15265895 (+)
G331476 NA other upstream 2843334 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 3389072 12706939 ~ 12712678 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 997952 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 1182870 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 1433732 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 1659319 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 1884550 17986762 ~ 17993014 (+)

Expression


Co-expression Network