G333197 (slco5a1,LOC108256392,LOC105018377,LOC106569033,LOC107690218)


Basic Information

Item Value
gene id G333197
gene name slco5a1,LOC108256392,LOC105018377,LOC106569033,LOC107690218
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16639164 ~ 16640767 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU394562
CGACCCCCAAAGTAGCTGATGAAGACCACAACAAGCAGGCTTCCAATATCGAAGCAGCTCACCAACAGACCTGACTCAGAGCTCCTCAGGCTGTACCGCTTCTCGATGGTGGTGATCACACTGCTCAGATAACCTGAAACCATCAGCGACTGGATGAACGTCAGGTAGCACATACAGAACAGGAAACACCTCGAGTCCGCCAGAATCACCCTGACGTACTTCCTCGCTGGGAATCCCACAATCCTTGCTAAAGAGAAGCCTATTTTTTTGCCTCCAGCCCTGTTGCCGTTGGGTCGCGTAGAGCCGCTTAGACCCACCATGCTGGACATGCTGGAGGGTGAGAAGTCAGTTTGGGTCGGAGAGTCCAGCTGGCTGGAGTCACTTTTTCCCTGCATCCCACTAAATACAACTCGGTCTGTATGGATTGAAGTGAATGTAGATGGAAGTTTCGGTTCCAAAGCCTTGTCAGCTGCTGGACAGCCTCCGTTGAGAACTGGTAAACTTTTGGATTTGTAGTAACTCCCCGAGTCGCCATATTGGCTTTGGAAATTGGTGACTTCCAGAGACTCTGACACGTCACTCCCAGTCTCATCATTATCTGATGAAGTCATTTTAACCGAACTCAGAGCCTGAATAATCAAAGGCGTAATTCAGGTTTAGGATTTAAAGCCTGAAGAAAGTGCACAAGGCTGGAAAGTGATCTACAGCCCTGACAGCACAAACAGCTCAGAATCAATAAATCTTCACGCATGATCTACATGCAAAGATGTTTGCACAAACAAACCTCCTGTCTTAACAAGAAAAGTGGACAcgtttaaatgaataattttaaaaacattttagtctTATCTAAAGCAGTGTCCAGGCATTGGCTTTTCCCCCCGTGTATCACAGGCTACTAAACATATACACGTTTAAAATTCATCACGTCATCATCTGAAAGGGCTTCTGTTGGTATTTTATTCCAAAAAGCTCCTCTTCGGGCCAGTTGTCACCACGTCAAGAGTCTCTCCAACatgctgtgctgtgttgtgttgtgttgtgttgCTCGGAGGTAGATATTGTTGTCCTCGACGCGGCCACTCAGC

Function

symbol description
slco5a1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Located in intracellular membrane-bounded organelle and plasma membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU394562 True 1088 lncRNA 0.47 2 16639164 16640767

Neighbor

gene id symbol gene type direction distance location
arfgef1 arfgef1,LOC107686689,LOC107727224,LOC107595140,LOC107584936 coding downstream 364653 16220089 ~ 16274511 (-)
relch kiaa1468,zgc:66014,LOC107584935,LOC107595141 coding downstream 438713 16145056 ~ 16200451 (-)
tnfrsf11a tnfrsf11a coding downstream 498208 16125117 ~ 16140956 (-)
LOC113541324 LOC108256119 coding downstream 523251 16096981 ~ 16115913 (-)
LOC113541299 cntnap2,cntnap2a,LOC108256479,LOC108256478,LOC108256453 coding downstream 739566 15777021 ~ 15899598 (-)
csrnp1b csrnp1,csrnp1b coding upstream 46955 16687722 ~ 16699950 (-)
LOC113541039 LOC108256133 coding upstream 154243 16795010 ~ 16801971 (-)
slc22a13b slc22a13 coding upstream 179462 16820229 ~ 16829385 (-)
map3k22 map3k20,LOC108256334,LOC108439325,LOC107758305,LOC107670426,LOC107741004,LOC107701654 coding upstream 252217 16892984 ~ 16952065 (-)
dlec1 dlec1 coding upstream 320086 16960853 ~ 16989036 (-)
G333175 sulf1 non-coding downstream 17151 16620758 ~ 16622013 (-)
LOC117595797 NA non-coding downstream 567666 16060280 ~ 16071498 (-)
G332797 NA non-coding downstream 597652 16041312 ~ 16041512 (-)
LOC113541293 NA non-coding downstream 654056 15979116 ~ 15985108 (-)
LOC113541266 NA non-coding downstream 695975 15935828 ~ 15943189 (-)
LOC117595808 NA non-coding upstream 96401 16737168 ~ 16760431 (-)
G333427 NA non-coding upstream 249417 16890184 ~ 16890991 (-)
G333428 NA non-coding upstream 250361 16891128 ~ 16891364 (-)
G333429 NA non-coding upstream 250670 16891437 ~ 16891827 (-)
G333434 acaa1 non-coding upstream 312958 16953725 ~ 16955463 (-)
cpa6 cpa6,LOC106579545 other downstream 326248 16281271 ~ 16312916 (-)
sec61g NA other downstream 1020322 15615498 ~ 15618842 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 1573354 14962837 ~ 15065810 (-)
LOC113541102 msc other downstream 1701760 14932995 ~ 14937404 (-)
LOC113541105 NA other downstream 2876549 13757658 ~ 13762615 (-)
oxsr1b oxsr1,oxsr1b other upstream 189023 16829790 ~ 16879884 (-)
myd88 myd88 other upstream 244384 16885151 ~ 16889424 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 475331 17116098 ~ 17139685 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other upstream 544757 17185524 ~ 17239116 (-)
LOC113541127 LOC108256571 other upstream 1266817 17907584 ~ 17908812 (-)

Expression


Co-expression Network