LOC113541357


Basic Information

Item Value
gene id LOC113541357
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16888906 ~ 16890161 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU394631
GCGCAGGTCTGAGATGATGTCCTTCCTCTCCGCCTGCTCCAGGAAGGACAGCAGCTTCGCCACCGTGGCCCCGGCGCGGGTCTGCCAGTCCTCCAGCAGCTTCTGGGTGGGATTCTCTCGCTTCTCGTAGTTTTTAATCTCCAGATTACGAAGTTTATCTCCGGGAAAGAGGAAACAATCGTGAATTTCATCATCAGTGACGTATTGGCACACATCCAATCACATGCCCGAGGTGATCCGCGTCATCTTAACACCGGAAATAAAATTTCACCCTTGTCCATTTCAGGTACTTTTCTTTTACAGCTCACGTTTACTCTGTTTCTAGTCATTTATCATCTGTGAAAGAGGTTTGAGCTTTTCACGCAGCAATAGGTTTTAGACTAAATACGTTACAATCATGgtttaaactaaaaactaaactaaaaactTGTCCCTTCTTATAAAGTTAGCGTTAGCGTGCGGCTAACATGAACTACTGCG
>XR_003404172.2
GCCTGCTCCAGGAAGGACAGCAGCTTCGCCACCGTGGCCCCGGCGCGGGTCTGCCAGTCCTCCAGCAGCTTCTGGGTGGGATTCTCTCGCTTCTCGTAGTTTTTAATCTCCAGATTACGAAGTTTATCTCCGGGAAAGAGGAAACAATCGTGAATTTCATCATCAGTGACGTATTGGCACACATCCAATCACATGCCCGAGGTGATCCGCGTCATCTTAACACCGGAAATAAAATTTCACCCTTGTCCATTTCAGaaaTGAACATCATCTGCGTCAGTCAGTCTGTTGAGAAACCAGGAAACTGACAGGCGAAGTTCCCGGATGAAAGAGCAGTCTCTGATTTGTCCGCACCTGCGTTGATCCATGGGATATGTAGTTTTTGCAAATGGACTACAAACAGAACCTTGCATTTCTAGGTCTTGTGCCTGTTTAGTTTCTGTGGGCCTCATTCTTATGTGTTGAAAAtgcaatttttcctttttttcacttCAGGCCCCTTAAGATTATTAAAACTCAGAGGCTGTGTGGAGTCAATTCTATTTTGCCCCTGGTTCTGATTCTCCTTTTTACATATTCAAAAAGTATAAAACCTGGAAaattccattcatccatctgtttTCCTTTGCCGCTTTTCCT

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0002755 MyD88-dependent toll-like receptor signaling pathway biological_process
GO:0002237 response to molecule of bacterial origin biological_process
GO:0005737 cytoplasm cellular_component
GO:0070976 TIR domain binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU394631 False 480 lncRNA 0.45 2 16888906 16889729
XR_003404172.2 True 636 lncRNA 0.45 3 16888937 16890161

Neighbor

gene id symbol gene type direction distance location
LOC113541068 LOC108256337 coding upstream 70467 16805646 ~ 16818439 (+)
LOC113541353 slco5a1,LOC108256392,LOC107741005,LOC107686683,LOC107584939,LOC107695420,LOC107758302 coding upstream 203935 16639105 ~ 16684971 (+)
sulf1 sulf1 coding upstream 256854 16537653 ~ 16632052 (+)
c22h8orf34 c23h8orf34,cunh8orf34,LOC103047203 coding upstream 359789 16444663 ~ 16529117 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281,LOC107695383 coding upstream 445762 16326985 ~ 16443144 (+)
acaa1 acaa1,LOC107701655,LOC107758307,LOC107741015,LOC107591283,LOC107670419 coding downstream 63523 16953684 ~ 16960846 (+)
plcd1a plcd1 coding downstream 94886 16985047 ~ 17014794 (+)
spag6 spag6,LOC107686700,LOC107741767,LOC107727238 coding downstream 184052 17074213 ~ 17085476 (+)
gars1 gars,LOC107591252,LOC107754935,LOC103377215,LOC107733158,LOC102797257 coding downstream 196049 17086210 ~ 17098345 (+)
klhl40b klhl40,LOC108256616,LOC107701660,LOC107754945,LOC107585012,LOC107591253,LOC107733151 coding downstream 221607 17111768 ~ 17115776 (+)
G333232 NA non-coding upstream 58927 16732916 ~ 16829979 (+)
G333148 NA non-coding upstream 255123 16605148 ~ 16633783 (+)
G333157 NA non-coding upstream 268817 16595781 ~ 16620089 (+)
G332859 NA non-coding upstream 667961 16219553 ~ 16220945 (+)
G332791 NA non-coding upstream 786309 16102271 ~ 16102597 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding downstream 2845 16893006 ~ 16897855 (+)
G333360 NA non-coding downstream 295968 17186129 ~ 17186675 (+)
G333548 NA non-coding downstream 472710 17362871 ~ 17363075 (+)
G333582 NA non-coding downstream 556024 17446185 ~ 17447043 (+)
G333787 NA non-coding downstream 777475 17667636 ~ 17667844 (+)
G332636 NA other upstream 1322243 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 1573938 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 1623011 15251635 ~ 15265895 (+)
G331476 NA other upstream 3630490 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 4176228 12706939 ~ 12712678 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 210003 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 394921 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 645783 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 871370 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 1096601 17986762 ~ 17993014 (+)

Expression


Co-expression Network