hhatlb (hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661)


Basic Information

Item Value
gene id hhatlb
gene name hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17100164 ~ 17110027 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU394735
CCTGAACCTCAATATTCACTTCCCTAAACATGAACCTCAATATTCACTTCTCTAAACATGAACCTCAATATTCACTTCTCTAAACCTCAATATTCACTTCCCTAAACATGAACCTCAATATTCACTTTTCTAAACCTCAATATTCACTTCCCTAAACACGAACCTCAATATTCACTTCCCTAAACATGAACCTCAAGATTCACTTCCCTAAACATGAACCTCAATATTCACTTCTCTGAATCTTGactcatttatattaattagcCAGAGCAACATGCTACCCCTCTCCTGGCTGGTACAGCTCTATGTCCGCACGCGCAGTGAGGCGCTCGGAGGGCTTATGAAGAAGCGCGGCCAGGTGCTGCACGTTCACGCTGATTACCTGCGCGAGAGCGCCGCGTTATAAAAGGCCGCCCAGGTGGCTGTGGATTTGCCTGAAAAGACATCCGAGGCGGTACAAATTCAGGGTCTAATaattttattcacaatataaaAGATAGTTATTTAATGCGACTAAGCATCTTACTTTGAAAAATCAAGCTATTTCTTTAGTGCGCACCGAATTAGCTGAATAGTGAATTTAatattgaggaaaaaaaaaaaaaagcttttttaggCATTATCATGTAGCCCTAAAGTGACTCGAGTTAAACTGACCCGTGTTAACTGTATTCTCTTATTTTTTATGCCTCAGACGGCGATGTCTGAATCCATGTCTCGCAGAATTAGAGCTGTATTTAATACCTTCAATTTCTGGAGTATTGTCCTGTACAACATCCTGGTCCTCAACAGTCCTGACTTTGCAAAGCTGGTTGCCAGGAGGTTACTGCTGAAAGGTTTCCCCTTATCCACCATCACTGTGATGTTTGTGACCTATTGCCTGGTGCAGataataaaagagagagaaaggaagcaGGCTTTGATTGATGACCCTGATCCTGTACCTCCTCCAACCACCATCAAGCCCCAAACCGAGGCCTTAGCCACTGCTGTGGATCCCAACAAGGAAAAGTCAGAGTAGGAACACGTTACTCTGTTTAGACTATTTTTATGGGTTTGAGttgtttattgcaaaaaaaaaaaatcatagtggGGGGACACAGAATTACATAACTTAGAAAGTATATGAAGGGTTTTTACACAGAACAAATACACAACTAGCATGTGTAATTTAGTAGCTTATCATTGCAGCTGTTACATGATGGCACTGTTTACTGCAAATATGTTGAAAGATCTCTTATAACTGTACATAAACTCTTGCTCTAAGAAATAAAGACTGAAAATGTTTCCAAGTGCTTAAATATGactgagtgtgttactgtgtatattaccactttcatttttacttacacacacacacacacacacacacacacacacacacacacacacacaaaacctgagAATGTCAGCACCAGGTGAATCATTTCACTACTCACTGCAAGTTCCCACGTGTAGAGCATGACAGAAACCTGCTCTAATATTATATAACCAGCCATTGTTTCATTGTCATCTGACGCATCTTGCTTCTATCACACCAAATATCAAATCAAAC
>TU394736
CCTGAACCTCAATATTCACTTCCCTAAACATGAACCTCAATATTCACTTCTCTAAACATGAACCTCAATATTCACTTCTCTAAACCTCAATATTCACTTCCCTAAACATGAACCTCAATATTCACTTTTCTAAACCTCAATATTCACTTCCCTAAACACGAACCTCAATATTCACTTCCCTAAACATGAACCTCAAGATTCACTTCCCTAAACATGAACCTCAATATTCACTTCTCTGAATCTTGactcatttatattaattagcCAGAGCAACATGCTACCCCTCTCCTGGCTGGTACAGCTCTATGTCCGCACGCGCAGTGAGGCGCTCGGAGGGCTTATGAAGAAGCGCGGCCAGGTGCTGCACGTTCACGCTGATTACCTGCGCGAGAGCGCCGCGTTATAAAAGGCCGCCCAGGTGGCTGTGGATTTGCCTGAAAAGACATCCGAGGCGGTACAAATTCAGGACGGCGATGTCTGAATCCATGTCTCGCAGAATTAGAGCTGTATTTAATACCTTCAATTTCTGGAGTATTGTCCTGTACAACATCCTGGTCCTCAACAGTCCTGACTTTGCAAAGCTGGTTGCCAGGAGGTTACTGCTGAAAGGTTTCCCCTTATCCACCATCACTGTGATGTTTGTGACCTATTGCCTGGTGCAGataataaaagagagagaaaggaagcaGGCTTTGATTGATGACCCTGATCCTGTACCTCCTCCAACCACCATCAAGCCCCAAACCGAGGCCTTAGCCACTGCTGTGGATCCCAACAAGGAAAAGTCAGAGTAGGAACACGTTACTCTGTTTAGACTATTTTTATGGGTTTGAGttgtttattgcaaaaaaaaaaaatcatagtggGGGGACACAGAATTACATAACTTAGAAAGTATATGAAGGGTTTTTACACAGAACAAATACACAACTAGCATGTGTAATTTAGTAGCTTATCATTGCAGCTGTTACATGATGGCACTGTTTACTGCAAATATGTTGAAAGATCTCTTATAACTGTACATAAACTCTTGCTCTAAGAAATAAAGACTGAAAATGTTTCCAAGTGCTTAAATATGactgagtgtgttactgtgtatattaccactttcatttttacttacacacacacacacacacacacacacacacacacacacacacacacaaaacctgagAATGTCAGCACCAGGTGAATCATTTCACTACTCACTGCAAGTTCCCACGTGTAGAGCATGACAGAAACCTGCTCTAATATTATATAACCAGCCATTGTTTCATTGTCATCTGACGCATCTTGCTTCTATCACACCAAATATCAAATCAAAC
>XM_026937901.2
TTGACAGCCTGGGCCACAGTGCTTCCCCTCACCAGCTCCGGATGTGTTAGAGATTTATCCtcgacagttttttttttttttttactttatttttctttgaatGTACTCTAGTTTTTGGGTGTCAAGGGGATTTTGGTTGATTTAAACGCCCAACTTGCTAAAGGTTGCTCAAGgTGCCTGGGGTGTGTGATTTTTGCTTACGCACAATGGGGATCAAAGCAGCTCTTCCTAAGTATGAGCTCTATTTTTATTATGTGGTGCTGTCCATGGCAATGCTCTGGGCGGCCAGTTGGATTTTTGAGGTGTCCAGCACGAATGCAAACCGGAAGTCCCTCAAGTCCAACATCCAGCCCGGATGGTACTACTTTGGCAGAAAAATGGACACGGCTGATTCGGAGTGGATGATGTGGTTCTCCACGTTCCGTGAGCACATCGTCTTCGCCCTGTCTGGCCATGTCTTATTCGCCAAGATCTGCTCCATGCTGGCTCCTCAGTACCGGTCTGTGGTCTACATGGTGTATGGTGCTCTTGCCATTCTCACGAGTATGGGTTGGACCTATGTGATGCTCATCCTCTCATACTGCGTGATGCTCTACAGCATCTCACTCGTCAAACTCCGCTGGCTCTGTTTCACCGCCGGACTCACCACGCTCGCCACTTTTAAGATGGAGCCTTTTGTTTCCTGGCAGGCTGGGTTCGTGAGCGGAGACTTTACTCTGCGCCCGGTGCTCTTTTATGGTGGCTGCGGCTTCACCATCATGCGCTGCCTGAGCTTCGCTCTGGAGAACTGTGAGAGGAAAGAGGGTCACTACAGCATCCTGGAGCTGCTCAAGTACAACTTCTACCTCCCTTTTTTCTACTTCGGACCCATCATGACCTTCGATAAATTCTATATCCAGGCTAATAATCCAGAATTGAGccgtaaagagagagagatgtggaaCATTTCCATCCAGGCCTTATTACACCTGGGAGTTATCATCATGGTGGCTATCATATTCCACTTCATGTATATTCTGACCCTTCCAAGTGACATGAAGCTGCTGAAACACCTCTCAGATTGGACTATcgCGGGTTTGGCGTACATGAATCTGGTGTATGACTGGGTGAAAGCCGCTGTGATGTTTGGTGTTATAAACACAGTGTCTCGACTGGACCACCTGGATCCTCCCAAACCTCCCAAATGCATCACAATGCTCTATGTCTTCTCTGAAACGCACTTTGATCGAGGAATCAATGACTGGCTCTGCAAGTACGTGTATAATTATCTCGGTGGTAAACATGATAATGTGCTGGATGAGTTGATCGCCTCACTCTGCACGTACGGCATCACGGCGCTGTGGCTCGGGCCGGGCTGGGTCGTCCTCATCTGGGCTTTCTTCAACTGCTTCGGCCTCAACTTTGAGCTGTGGATATCCAAGTTCTTCTCCATGGAGCCCTTCTTTACCATTGAGACGGCGATGTCTGAATCCATGTCTCGCAGAATTAGAGCTGTATTTAATACCTTCAATTTCTGGAGTATTGTCCTGTACAACATCCTGGTCCTCAACAGTCCTGACTTTGCAAAGCTGGTTGCCAGGAGGTTACTGCTGAAAGGTTTCCCCTTATCCACCATCACTGTGATGTTTGTGACCTATTGCCTGGTGCAGataataaaagagagagaaaggaagcaGGCTTTGATTGATGACCCTGATCCTGTACCTCCTCCAACCACCATCAAGCCCCAAACCGAGGCCTTAGCCACTGCTGTGGATCCCAACAAGGAAAAGTCAGAGTAGGAACACGTTACTCTGTTTAGACTATTTTTATGGGTTTGAGttgtttattgcaaaaaaaaaaaatcatagtggGGGGACACAGAATTACATAACTTAGAAAGTATATGAAGGGTTTTTACACAGAACAAATACACAACTAGCATGTGTAATTTAGTAGCTTATCATTGCAGCTGTTACATGATGGCACTGTTTACTGCAAATATGTTGAAAGATCTCTTATAACTGTACATAAACTCTTGCTCTAAGAAATAAAGACTGAAAATGTTTCCAAGTGCTTAAA
>XM_034297884.1
AAtggtatataaagtatatagaaTAATGCTGATGGATTGTGGATGACATGCAGGTGCTTCTTGCCATGCGAAGAATCAGATACGCATTGAGTTGGTGTCTAATAGACGgTGCCTGGGGTGTGTGATTTTTGCTTACGCACAATGGGGATCAAAGCAGCTCTTCCTAAGTATGAGCTCTATTTTTATTATGTGGTGCTGTCCATGGCAATGCTCTGGGCGGCCAGTTGGATTTTTGAGGTGTCCAGCACGAATGCAAACCGGAAGTCCCTCAAGTCCAACATCCAGCCCGGATGGTACTACTTTGGCAGAAAAATGGACACGGCTGATTCGGAGTGGATGATGTGGTTCTCCACGTTCCGTGAGCACATCGTCTTCGCCCTGTCTGGCCATGTCTTATTCGCCAAGATCTGCTCCATGCTGGCTCCTCAGTACCGGTCTGTGGTCTACATGGTGTATGGTGCTCTTGCCATTCTCACGAGTATGGGTTGGACCTATGTGATGCTCATCCTCTCATACTGCGTGATGCTCTACAGCATCTCACTCGTCAAACTCCGCTGGCTCTGTTTCACCGCCGGACTCACCACGCTCGCCACTTTTAAGATGGAGCCTTTTGTTTCCTGGCAGGCTGGGTTCGTGAGCGGAGACTTTACTCTGCGCCCGGTGCTCTTTTATGGTGGCTGCGGCTTCACCATCATGCGCTGCCTGAGCTTCGCTCTGGAGAACTGTGAGAGGAAAGAGGGTCACTACAGCATCCTGGAGCTGCTCAAGTACAACTTCTACCTCCCTTTTTTCTACTTCGGACCCATCATGACCTTCGATAAATTCTATATCCAGGCTAATAATCCAGAATTGAGccgtaaagagagagagatgtggaaCATTTCCATCCAGGCCTTATTACACCTGGGAGTTATCATCATGGTGGCTATCATATTCCACTTCATGTATATTCTGACCCTTCCAAGTGACATGAAGCTGCTGAAACACCTCTCAGATTGGACTATcgCGGGTTTGGCGTACATGAATCTGGTGTATGACTGGGTGAAAGCCGCTGTGATGTTTGGTGTTATAAACACAGTGTCTCGACTGGACCACCTGGATCCTCCCAAACCTCCCAAATGCATCACAATGCTCTATGTCTTCTCTGAAACGCACTTTGATCGAGGAATCAATGACTGGCTCTGCAAGTACGTGTATAATTATCTCGGTGGTAAACATGATAATGTGCTGGATGAGTTGATCGCCTCACTCTGCACGTACGGCATCACGGCGCTGTGGCTCGGGCCGGGCTGGGTCGTCCTCATCTGGGCTTTCTTCAACTGCTTCGGCCTCAACTTTGAGCTGTGGATATCCAAGTTCTTCTCCATGGAGCCCTTCTTTACCATTGAGACGGCGATGTCTGAATCCATGTCTCGCAGAATTAGAGCTGTATTTAATACCTTCAATTTCTGGAGTATTGTCCTGTACAACATCCTGGTCCTCAACAGTCCTGACTTTGCAAAGCTGGTTGCCAGGAGGTTACTGCTGAAAGGTTTCCCCTTATCCACCATCACTGTGATGTTTGTGACCTATTGCCTGGTGCAGataataaaagagagagaaaggaagcaGGCTTTGATTGATGACCCTGATCCTGTACCTCCTCCAACCACCATCAAGCCCCAAACCGAGGCCTTAGCCACTGCTGTGGATCCCAACAAGGAAAAGTCAGAGTAGGAACACGTTACTCTGTTTAGACTATTTTTATGGGTTTGAGttgtttattgcaaaaaaaaaaaatcatagtggGGGGACACAGAATTACATAACTTAGAAAGTATATGAAGGGTTTTTACACAGAACAAATACACAACTAGCATGTGTAATTTAGTAGCTTATCATTGCAGCTGTTACATGATGGCACTGTTTACTGCAAATATGTTGAAAGATCTCTTATAACTGTACATAAACTCTTGCTCTAAGAAATAAAGACTGAAAATGTTTCCAAGTGCTTAAA

Function

symbol description
hhatlb Predicted to enable acyltransferase activity. Predicted to be involved in negative regulation of N-terminal protein palmitoylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in muscle pioneer; myoseptum; and myotome. Orthologous to human HHATL (hedgehog acyltransferase like).
hhatl Predicted to enable acyltransferase activity. Predicted to be involved in negative regulation of N-terminal protein palmitoylation. Located in perinuclear region of cytoplasm.

NR:

description
protein-cysteine N-palmitoyltransferase HHAT-like protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU394735 False 1555 TUCP 0.40 4 17107472 17110027
TU394736 False 1328 TUCP 0.42 5 17107472 17110027
XM_026937901.2 True 2061 mRNA 0.46 12 17101170 17109773
XM_034297884.1 False 1996 mRNA 0.46 13 17100164 17109773

Neighbor

gene id symbol gene type direction distance location
gars1 gars,LOC107591252,LOC107754935,LOC103377215,LOC107733158,LOC102797257 coding upstream 1819 17086210 ~ 17098345 (+)
spag6 spag6,LOC107686700,LOC107741767,LOC107727238 coding upstream 14688 17074213 ~ 17085476 (+)
plcd1a plcd1 coding upstream 85370 16985047 ~ 17014794 (+)
acaa1 acaa1,LOC107701655,LOC107758307,LOC107741015,LOC107591283,LOC107670419 coding upstream 139318 16953684 ~ 16960846 (+)
LOC113541068 LOC108256337 coding upstream 281725 16805646 ~ 16818439 (+)
klhl40b klhl40,LOC108256616,LOC107701660,LOC107754945,LOC107585012,LOC107591253,LOC107733151 coding downstream 1741 17111768 ~ 17115776 (+)
sec22c sec22c coding downstream 52973 17163000 ~ 17171598 (+)
LOC113541296 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 coding downstream 175077 17285104 ~ 17286736 (+)
LOC117595788 NA coding downstream 177113 17287140 ~ 17290895 (+)
LOC113541297 LOC108256406 coding downstream 186546 17296573 ~ 17299390 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 202309 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 210003 16888906 ~ 16890161 (+)
G333232 NA non-coding upstream 270185 16732916 ~ 16829979 (+)
G333148 NA non-coding upstream 466381 16605148 ~ 16633783 (+)
G333157 NA non-coding upstream 480075 16595781 ~ 16620089 (+)
G333360 NA non-coding downstream 76102 17186129 ~ 17186675 (+)
G333548 NA non-coding downstream 252844 17362871 ~ 17363075 (+)
G333582 NA non-coding downstream 336158 17446185 ~ 17447043 (+)
G333787 NA non-coding downstream 557609 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 560389 17670416 ~ 17670625 (+)
G332636 NA other upstream 1533501 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 1785196 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 1834269 15251635 ~ 15265895 (+)
G331476 NA other upstream 3841748 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 4387486 12706939 ~ 12712678 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 175055 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 425917 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 651504 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 876735 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 1205327 18315354 ~ 18323295 (+)

Expression


Co-expression Network