myd88 (myd88)


Basic Information

Item Value
gene id myd88
gene name myd88
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16885151 ~ 16889424 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU394846
gataatgtgttctagaaagatacagatacagaacgCTGATGGACTGCTGGACTGCTGGAAATTCACTTGGAAGGTTTTTACTTCCTTGTGGGCaaacagtcagatatgaagctcgcagGACAAAGAAACACCAcgttcattaatgtgaatgtaaacaatacattttaaaaataataatttcaagagctggaatgaaagaaaaagaaaaaaaaaattcttaagcCACATCCACTCgggttttaaatctgaatacagatccacagatatgaatatttggagcattaaacAAATACAGGTAGTGTGTATATGTCCAAAAggatgtgaacacctgaccatcacgccagTATGAGCTTGTTGGACATCTCATTCCAAAACAATGAcaattctatatatatatatatatatatatatattataccaTCAGTTCCTGACTTGACTGGAGGGAACAAGTGGGAAAATAGCTTCAGATTCTACTACAAATATGAGAAATATGTGAGataatatattagtatattatagttttaCAGCATATTTAAACTTCAGATATTATTCTGTCAACATTGTAGACAATTTTCTAAGTTTTCTGAGTTTTTTCCACATCAGTAAGAATGTGAAATATGTTTTCTGAAAAATGCCAAGTTATGgaagtttatgaaatactcgtCCAACATCCCTTCCACGGTAGGAGTGTAAACCGTCATAAAAGTTTTATATcaataaatagcaaaaaaataatacttcATCACAAAATGTGACTCAGCGCTAATTTATGGCTTGTGCAGTATTTCTAAGAATCCGTAtgatttcaaaaatgtttttttttttccttctcacacaacttttttctttttgaatacTTATACATCATATGCACTTGATTTGTCCCAGGCACAGAAAACTATAATCATTATTGaaaatcattcatttcataATAAGATAGTCTGTTATTGTATAGAAAATATATCAGAAATTGAATgatttttcttctgtctttcagAGCTTGCTTTATTGATGATTATCGCTGTACTCTGGCAAAGCTCTGTTTTTATAtccttttttaaactttacatccataagaaatattttatgcC
>TU394848
gataatgtgttctagaaagatacagatacagaacgCTGATGGACTGCTGGACTGCTGGAAATTCACTTGGAAGGTTTTTACTTCCTTGTGGGCaaacagtcagatatgaagctcgcagGACAAAGAAACACCAcgttcattaatgtgaatgtaaacaatacattttaaaaataataatttcaagagctggaatgaaagaaaaagaaaaaaaaaattcttaagcCACATCCACTCgggttttaaatctgaatacagatccacagatatgaatatttggagcattaaacAAATACAGGTAGTGTGTATATGTCCAAAAggatgtgaacacctgaccatcacgccagTATGAGCTTGTTGGACATCTCATTCCAAAACAATGAcaattctatatatatatatattataccaTCAGTTCCTGACTTGACTGGAGGGAACAAGTGGGAAAATAGCTTCAGATTCTACTACAAATATGAGAAATATGTGAGataatatattagtatattatagttttaCAGCATATTTAAACTTCAGATATTATTCTGTCAACATTGTAGACAATTTTCTAAGTTTTCTGAGTTTTTTCCACATCAGTAAGAATGTGAAATATGTTTTCTGAAAAATGCCAAGTTATGgaagtttatgaaatactcgtCCAACATCCCTTCCACGGTAGGAGTGTAAACCGTCATAAAAGTTTTATATcaataaatagcaaaaaaataatacttcATCACAAAATGTGACTCAGCGCTAATTTATGGCTTGTGCAGTATTTCTAAGAATCCGTAtgatttcaaaaatgtttttttttttccttctcacacaacttttttctttttgaatacTTATACATCATATGCACTTGATTTGTCCCAGGCACAGAAAACTATAATCATTATTGaaaatcattcatttcataATAAGATAGTCTGTTATTGTATAGAAAATATATCAGAAATTGAATgatttttcttctgtctttcagAGCTTGCTTTATTGATGATTATCGCTGTACTCTGGCAAAGCTCTGTTTTTATAtccttttttaaactttacatccataagaaatattttatgcC
>XM_026938292.2
TTTCCTCTTTCCCGGAGATAAACTTCGTAATCTAATAGATAAAGTGTACACACAGTGTAGTCAGATTAGTCTGTTCTGTTTCTTTCGTAAAAATTCTTTCTGAAATGAGTTAAAAGGAGCAAAGGAAGGTTATTACCGCCGTTCAGGAAAGTattaattaatctattaattactactaatagtaataataataaggttgACACTTGTTAGTGGCTCATCATGTCGTCGAGTTCATCCTCCTGCGTGGACTATGAGTCGATTCCAGCCATAGCTCTGAACTACAGCGTGAGAAAAAGACTGGCTCTGTATTTAAACCCCACGAACACGGTGGCAGCAGACTGGACTGAAATCGCCGAGAAAATGGAGTTCACCTACCTGGAGATTAAAAACTACGAGAAGCGAGAGAATCCCACCCAGAAGCTGCTGGAGGACTGGCAGACCCGCGCCGGGGCCACGGTGGCGAAGCTGCTGTCCTTCCTGGAGCAGGCGGAGAGGAAGGACATCATCTCAGACCTGCGCCCGCTTATAGATGACGACTGCAGGAAGTATCTAGAGAGGCAAAAGGAGCTTCCTGTTCAGGTGCCCGAGGTGGACAGCAGGCACCAGGATCGAGGCATCACCGTAAATGACGGTCACATGCCGGAGATGTTCGACGCGTTCATTTGCTACTGCCAGAGCGACTTCCAGTTTGTCCATGAGATGATCAGACAGCTGGAGCAGACCGACTACAacctgaagctgtgtgtgtttgaccgTGACGTCCTGCCCGGGACATGTGTGTGGACCATCACCAGCGAGCTCATCGAGAGAAGgtGCAAGAGGATGGTGGTCGTCATTTCTGATGATTATTTGGAAAGCGATGCTTGTGACTTCCAGACTAAATTTGCCCTCAGCCTTTGCCCAGGGGCTCGGACCAAACGGCTGATTCCTGTGGTCTACAAGCCCATGACGAAGCCTTTTCCCAGCATTCTGCGCTTCCTGACAGTGTGTGACTACACCAGGCCATGCACACAGTCCTGGTTCTGGGTTCGACTGGCCAAAGCCCTGTCCCTGTCCTGAACACCGTACATCCAGCTCGCTCACTGCCACAACTAGCTTGCTTTATTGATGATTATCGCTGTACTCTGGCAAAGCTCTGTTTTTATAtccttttttaaactttacatccataagaaatattttatgcCTTTTGTACTCTGTTTAACTGGATcttttcttaataaaaaaatctgttgtatAAACA

Function

symbol description
myd88 Predicted to enable Toll-like receptor binding activity. Acts upstream of or within several processes, including neutrophil activation involved in immune response; neutrophil chemotaxis; and response to bacterium. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane. Is expressed in several structures, including digestive system; hematopoietic system; pleuroperitoneal region; tail bud; and ventral fin fold. Human ortholog(s) of this gene implicated in Waldenstroem's macroglobulinemia and primary immunodeficiency disease. Orthologous to human MYD88 (MYD88 innate immune signal transduction adaptor).

NR:

description
myeloid differentiation primary response protein MyD88

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0002755 MyD88-dependent toll-like receptor signaling pathway biological_process
GO:0002237 response to molecule of bacterial origin biological_process
GO:0005737 cytoplasm cellular_component
GO:0070976 TIR domain binding molecular_function

KEGG:

id description
K04729 MYD88; myeloid differentiation primary response protein MyD88

RNA

RNA id representative length rna type GC content exon number start site end site
TU394846 False 1091 lncRNA 0.31 2 16885207 16886322
TU394848 False 1079 lncRNA 0.32 2 16885207 16886322
XM_026938292.2 True 1243 mRNA 0.47 6 16885151 16889424

Neighbor

gene id symbol gene type direction distance location
slc22a13b slc22a13 coding downstream 55766 16820229 ~ 16829385 (-)
LOC113541039 LOC108256133 coding downstream 83180 16795010 ~ 16801971 (-)
csrnp1b csrnp1,csrnp1b coding downstream 185201 16687722 ~ 16699950 (-)
arfgef1 arfgef1,LOC107686689,LOC107727224,LOC107595140,LOC107584936 coding downstream 610640 16220089 ~ 16274511 (-)
relch kiaa1468,zgc:66014,LOC107584935,LOC107595141 coding downstream 684700 16145056 ~ 16200451 (-)
map3k22 map3k20,LOC108256334,LOC108439325,LOC107758305,LOC107670426,LOC107741004,LOC107701654 coding upstream 3560 16892984 ~ 16952065 (-)
dlec1 dlec1 coding upstream 71429 16960853 ~ 16989036 (-)
vill vill coding upstream 126200 17015624 ~ 17028893 (-)
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding upstream 141436 17030860 ~ 17073642 (-)
nktr nktr,LOC107670423 coding upstream 253037 17142461 ~ 17161207 (-)
LOC117595808 NA non-coding downstream 124720 16737168 ~ 16760431 (-)
G333197 slco5a1,LOC108256392,LOC105018377,LOC106569033,LOC107690218 non-coding downstream 244384 16639164 ~ 16640767 (-)
G333175 sulf1 non-coding downstream 263138 16620758 ~ 16622013 (-)
LOC117595797 NA non-coding downstream 813653 16060280 ~ 16071498 (-)
G332797 NA non-coding downstream 843639 16041312 ~ 16041512 (-)
G333427 NA non-coding upstream 760 16890184 ~ 16890991 (-)
G333428 NA non-coding upstream 1704 16891128 ~ 16891364 (-)
G333429 NA non-coding upstream 2013 16891437 ~ 16891827 (-)
G333434 acaa1 non-coding upstream 64301 16953725 ~ 16955463 (-)
G333417 NA non-coding upstream 118403 17007827 ~ 17008733 (-)
oxsr1b oxsr1,oxsr1b other downstream 5267 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 572235 16281271 ~ 16312916 (-)
sec61g NA other downstream 1266309 15615498 ~ 15618842 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 1819341 14962837 ~ 15065810 (-)
LOC113541102 msc other downstream 1947747 14932995 ~ 14937404 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 226674 17116098 ~ 17139685 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other upstream 296100 17185524 ~ 17239116 (-)
LOC113541127 LOC108256571 other upstream 1018160 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 1019900 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 1026660 17916084 ~ 17931814 (-)

Expression


Co-expression Network