G333417


Basic Information

Item Value
gene id G333417
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17007827 ~ 17008733 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU394860
TGAATTTTCTGCCAGATTCTTGGCTTTGCTCTCCTTGAAGGAGGACATCTCATAGCAGGCCTGTTTCTCACGTGAATGCTCGAAGCTGTTGAAATGGACACTCTTGCAGTAGATCACCAGGTCGGACAGCTCTTTAGCAAgcttgatcttttttttcCTTAGTTTTGGTCTCCTGTTCGCCCTGTTTGGCTTCAGCGGCTTCATCTTCTTCAGACACGCTGTCCACATCGTCCGTGTTGTTGTTAAATGCTACGTCCAGCTTGTTGAGGCGTTTACCTTTAACCAGGATCCGCCCCTTTAATTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU394860 True 305 lncRNA 0.47 2 17007827 17008733

Neighbor

gene id symbol gene type direction distance location
dlec1 dlec1 coding downstream 18791 16960853 ~ 16989036 (-)
map3k22 map3k20,LOC108256334,LOC108439325,LOC107758305,LOC107670426,LOC107741004,LOC107701654 coding downstream 55762 16892984 ~ 16952065 (-)
slc22a13b slc22a13 coding downstream 178442 16820229 ~ 16829385 (-)
LOC113541039 LOC108256133 coding downstream 205856 16795010 ~ 16801971 (-)
csrnp1b csrnp1,csrnp1b coding downstream 307877 16687722 ~ 16699950 (-)
vill vill coding upstream 6891 17015624 ~ 17028893 (-)
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding upstream 22127 17030860 ~ 17073642 (-)
nktr nktr,LOC107670423 coding upstream 133728 17142461 ~ 17161207 (-)
si:ch211-161h7.4 LOC108256371 coding upstream 257523 17266256 ~ 17276128 (-)
si:ch211-161h7.5 LOC108256129 coding upstream 268671 17277404 ~ 17281623 (-)
G333434 acaa1 non-coding downstream 52364 16953725 ~ 16955463 (-)
G333429 NA non-coding downstream 116000 16891437 ~ 16891827 (-)
G333428 NA non-coding downstream 116463 16891128 ~ 16891364 (-)
G333427 NA non-coding downstream 116836 16890184 ~ 16890991 (-)
LOC117595808 NA non-coding downstream 247396 16737168 ~ 16760431 (-)
G333452 NA non-coding upstream 21732 17030465 ~ 17030697 (-)
G333454 NA non-coding upstream 28434 17037167 ~ 17037512 (-)
G333470 NA non-coding upstream 77150 17085883 ~ 17086204 (-)
G333525 NA non-coding upstream 277020 17285753 ~ 17301996 (-)
G333527 NA non-coding upstream 284642 17293375 ~ 17298446 (-)
myd88 myd88 other downstream 118403 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 127943 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 694911 16281271 ~ 16312916 (-)
sec61g NA other downstream 1388985 15615498 ~ 15618842 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 1942017 14962837 ~ 15065810 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 107365 17116098 ~ 17139685 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other upstream 176791 17185524 ~ 17239116 (-)
LOC113541127 LOC108256571 other upstream 898851 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 900591 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 907351 17916084 ~ 17931814 (-)

Expression


Co-expression Network