G333434 (acaa1)


Basic Information

Item Value
gene id G333434
gene name acaa1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16953725 ~ 16955463 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU394880
TTGACATGAGTACAGTGTGTCAGGGCTGGGAAACGCTGCTGGACTCTGAAATGGACAAACCGGGTTTTAATCTCATGGAGTTGTGACTCACCAACACACATGTCCCCCAGTTTATCTGGAGACAGTCCCACGTCCCTCAGCACTGCTGTCATCACTGCACTCAGCAGCTCGTCTGGGGTCGTGTCCTtgaaGGAGCCTCTCTTGGCCCTCCCTATTGGAGTCCTTAAGCCGTGCACGACCACCACATCCCGAGGGTCAGCTGGAGCGCGCGCGCTGCAGCCCTGAAATTCCGCGCGTGACGGTGACAAATGGCGGGAAACAACCTTGAGCCTGTTCATCACTGACGGTGAGCTGAGAAACATGGAGACATGAACACAATGCAAAAACACAGGACTTTAGCCT

Function

symbol description
acaa1 Predicted to enable acetyl-CoA C-acyltransferase activity. Predicted to be involved in fatty acid beta-oxidation and phenylacetate catabolic process. Predicted to be active in peroxisome. Is expressed in gut and liver. Orthologous to human ACAA1 (acetyl-CoA acyltransferase 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU394880 True 402 lncRNA 0.54 2 16953725 16955463

Neighbor

gene id symbol gene type direction distance location
map3k22 map3k20,LOC108256334,LOC108439325,LOC107758305,LOC107670426,LOC107741004,LOC107701654 coding downstream 1660 16892984 ~ 16952065 (-)
slc22a13b slc22a13 coding downstream 124340 16820229 ~ 16829385 (-)
LOC113541039 LOC108256133 coding downstream 151754 16795010 ~ 16801971 (-)
csrnp1b csrnp1,csrnp1b coding downstream 253775 16687722 ~ 16699950 (-)
arfgef1 arfgef1,LOC107686689,LOC107727224,LOC107595140,LOC107584936 coding downstream 679214 16220089 ~ 16274511 (-)
dlec1 dlec1 coding upstream 5390 16960853 ~ 16989036 (-)
vill vill coding upstream 60161 17015624 ~ 17028893 (-)
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding upstream 75397 17030860 ~ 17073642 (-)
nktr nktr,LOC107670423 coding upstream 186998 17142461 ~ 17161207 (-)
si:ch211-161h7.4 LOC108256371 coding upstream 310793 17266256 ~ 17276128 (-)
G333429 NA non-coding downstream 61898 16891437 ~ 16891827 (-)
G333428 NA non-coding downstream 62361 16891128 ~ 16891364 (-)
G333427 NA non-coding downstream 62734 16890184 ~ 16890991 (-)
LOC117595808 NA non-coding downstream 193294 16737168 ~ 16760431 (-)
G333197 slco5a1,LOC108256392,LOC105018377,LOC106569033,LOC107690218 non-coding downstream 312958 16639164 ~ 16640767 (-)
G333417 NA non-coding upstream 52364 17007827 ~ 17008733 (-)
G333452 NA non-coding upstream 75002 17030465 ~ 17030697 (-)
G333454 NA non-coding upstream 81704 17037167 ~ 17037512 (-)
G333470 NA non-coding upstream 130420 17085883 ~ 17086204 (-)
G333525 NA non-coding upstream 330290 17285753 ~ 17301996 (-)
myd88 myd88 other downstream 64301 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 73841 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 640809 16281271 ~ 16312916 (-)
sec61g NA other downstream 1334883 15615498 ~ 15618842 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 1887915 14962837 ~ 15065810 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 160635 17116098 ~ 17139685 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other upstream 230061 17185524 ~ 17239116 (-)
LOC113541127 LOC108256571 other upstream 952121 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 953861 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 960621 17916084 ~ 17931814 (-)

Expression


Co-expression Network