G333452


Basic Information

Item Value
gene id G333452
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17030465 ~ 17030697 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU394901
TCCAAATCATAACCAGCCACTGATTCTTGCGAGGTAAGGTAAGAAATATGTAACTGGAATCTCAGATTGAGTCACAGGCACACAATTTGATTTAATCAGATGCTTTATTTGTTTTGGTCTGAATGACATGAACCTTGCTCTGTAGACGGAAATGTGAATTTTCAGACAGCACCAGAGTTTTATTTGCTAAAGGAGTCAGCAATGTAGCCACTTCGTGTGATTAATAGACGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU394901 True 233 lncRNA 0.39 1 17030465 17030697

Neighbor

gene id symbol gene type direction distance location
vill vill coding downstream 1572 17015624 ~ 17028893 (-)
dlec1 dlec1 coding downstream 41429 16960853 ~ 16989036 (-)
map3k22 map3k20,LOC108256334,LOC108439325,LOC107758305,LOC107670426,LOC107741004,LOC107701654 coding downstream 78400 16892984 ~ 16952065 (-)
slc22a13b slc22a13 coding downstream 201080 16820229 ~ 16829385 (-)
LOC113541039 LOC108256133 coding downstream 228494 16795010 ~ 16801971 (-)
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding upstream 163 17030860 ~ 17073642 (-)
nktr nktr,LOC107670423 coding upstream 111764 17142461 ~ 17161207 (-)
si:ch211-161h7.4 LOC108256371 coding upstream 235559 17266256 ~ 17276128 (-)
si:ch211-161h7.5 LOC108256129 coding upstream 246707 17277404 ~ 17281623 (-)
ccdc58 ccdc58,LOC107733097,LOC107701664 coding upstream 274458 17305155 ~ 17309921 (-)
G333417 NA non-coding downstream 21732 17007827 ~ 17008733 (-)
G333434 acaa1 non-coding downstream 75002 16953725 ~ 16955463 (-)
G333429 NA non-coding downstream 138638 16891437 ~ 16891827 (-)
G333428 NA non-coding downstream 139101 16891128 ~ 16891364 (-)
G333427 NA non-coding downstream 139474 16890184 ~ 16890991 (-)
G333454 NA non-coding upstream 6470 17037167 ~ 17037512 (-)
G333470 NA non-coding upstream 55186 17085883 ~ 17086204 (-)
G333525 NA non-coding upstream 255056 17285753 ~ 17301996 (-)
G333527 NA non-coding upstream 262678 17293375 ~ 17298446 (-)
G333649 NA non-coding upstream 347599 17378296 ~ 17378572 (-)
myd88 myd88 other downstream 141041 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 150581 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 717549 16281271 ~ 16312916 (-)
sec61g NA other downstream 1411623 15615498 ~ 15618842 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 1964655 14962837 ~ 15065810 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 85401 17116098 ~ 17139685 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other upstream 154827 17185524 ~ 17239116 (-)
LOC113541127 LOC108256571 other upstream 876887 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 878627 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 885387 17916084 ~ 17931814 (-)

Expression


Co-expression Network