G333470


Basic Information

Item Value
gene id G333470
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17085883 ~ 17086204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU394919
TAAATCAGTCaaatcctcttttttttaaaaaaaaaaaaaactaacctaCAAAAAACTATAATGTATTTAGAGAATGATAAAGTCACAGAAAACTGCAGATTATAAATCTACACCACATGGCTGTAAAGGACTAATTTACAGAATATTGTTAGCTAAAGTTATTGAGTTTATCTTCCTCATCTAATCCACACCAGACATCGAAAATactttggggggaaaaaagaaaccatGTAAAACAACTTAGGACATTATTTACAGCCGaactgacaaattaaaaaacaaaatgacgCCTAAAAGTCACTTCATTCTGCTCGACATTCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU394919 True 322 lncRNA 0.31 1 17085883 17086204

Neighbor

gene id symbol gene type direction distance location
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding downstream 12241 17030860 ~ 17073642 (-)
vill vill coding downstream 56990 17015624 ~ 17028893 (-)
dlec1 dlec1 coding downstream 96847 16960853 ~ 16989036 (-)
map3k22 map3k20,LOC108256334,LOC108439325,LOC107758305,LOC107670426,LOC107741004,LOC107701654 coding downstream 133818 16892984 ~ 16952065 (-)
slc22a13b slc22a13 coding downstream 256498 16820229 ~ 16829385 (-)
nktr nktr,LOC107670423 coding upstream 56257 17142461 ~ 17161207 (-)
si:ch211-161h7.4 LOC108256371 coding upstream 180052 17266256 ~ 17276128 (-)
si:ch211-161h7.5 LOC108256129 coding upstream 191200 17277404 ~ 17281623 (-)
ccdc58 ccdc58,LOC107733097,LOC107701664 coding upstream 218951 17305155 ~ 17309921 (-)
kpna1 kpna1,LOC107591240,LOC107754951,LOC107733038 coding upstream 230316 17316520 ~ 17329657 (-)
G333454 NA non-coding downstream 48371 17037167 ~ 17037512 (-)
G333452 NA non-coding downstream 55186 17030465 ~ 17030697 (-)
G333417 NA non-coding downstream 77150 17007827 ~ 17008733 (-)
G333434 acaa1 non-coding downstream 130420 16953725 ~ 16955463 (-)
G333429 NA non-coding downstream 194056 16891437 ~ 16891827 (-)
G333525 NA non-coding upstream 199549 17285753 ~ 17301996 (-)
G333527 NA non-coding upstream 207171 17293375 ~ 17298446 (-)
G333649 NA non-coding upstream 292092 17378296 ~ 17378572 (-)
G333650 ccdc191 non-coding upstream 294651 17380855 ~ 17381236 (-)
G333652 NA non-coding upstream 297538 17383742 ~ 17384023 (-)
myd88 myd88 other downstream 196459 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 205999 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 772967 16281271 ~ 16312916 (-)
sec61g NA other downstream 1467041 15615498 ~ 15618842 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 2020073 14962837 ~ 15065810 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 29894 17116098 ~ 17139685 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other upstream 99320 17185524 ~ 17239116 (-)
LOC113541127 LOC108256571 other upstream 821380 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 823120 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 829880 17916084 ~ 17931814 (-)

Expression


Co-expression Network