G333527


Basic Information

Item Value
gene id G333527
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17293375 ~ 17298446 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU394994
GTGAAAgccagctttaaaaaaatgagtttttaaaagtttcttAAAATCTGACTCACAGTGTATCAATCTTATGCTCAAAGGAAGATCATACAAAGGCTAGGCACTGAAACAGCAAACATGCTATCTCCCttagtttttaatttagacGTTGGGGTGATCAACACGTTTTGATCTGATGATCGCAGAGTCCTTGTGGGTCTGTATGGAATCAATAATTCAGCAATATAAGACGGTGCTTGCCCATGCAATGCTTTGTAGGTGATaagaaagattttaaaatctattctaTATTTGATTGGTAGGCAGTGAAGTGCAGCCAAGACTGGAGTAATTCGGGCACAACGAAGACTTTTCAACCGCTTGAAGTCGAGAAACTGTAGATTGACTGAGACGAGTGAACAGCACATTACAGTAGTCAAAgcatgatgaaataaaaacatgtataatccTTTCCAGAGCCCGAGGGTTCACAACCGATcaaatttttgaaatatttc

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU394994 True 497 lncRNA 0.38 2 17293375 17298446

Neighbor

gene id symbol gene type direction distance location
si:ch211-161h7.5 LOC108256129 coding downstream 11752 17277404 ~ 17281623 (-)
si:ch211-161h7.4 LOC108256371 coding downstream 17247 17266256 ~ 17276128 (-)
nktr nktr,LOC107670423 coding downstream 132168 17142461 ~ 17161207 (-)
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding downstream 219733 17030860 ~ 17073642 (-)
vill vill coding downstream 264482 17015624 ~ 17028893 (-)
ccdc58 ccdc58,LOC107733097,LOC107701664 coding upstream 6709 17305155 ~ 17309921 (-)
kpna1 kpna1,LOC107591240,LOC107754951,LOC107733038 coding upstream 18074 17316520 ~ 17329657 (-)
qtrt2 qtrt2 coding upstream 66195 17364641 ~ 17378007 (-)
zdhhc23b zdhhc23 coding upstream 92209 17390655 ~ 17397944 (-)
gramd1c gramd1c coding upstream 101914 17400360 ~ 17415956 (-)
G333470 NA non-coding downstream 207171 17085883 ~ 17086204 (-)
G333454 NA non-coding downstream 255863 17037167 ~ 17037512 (-)
G333452 NA non-coding downstream 262678 17030465 ~ 17030697 (-)
G333417 NA non-coding downstream 284642 17007827 ~ 17008733 (-)
G333434 acaa1 non-coding downstream 337912 16953725 ~ 16955463 (-)
G333649 NA non-coding upstream 79850 17378296 ~ 17378572 (-)
G333650 ccdc191 non-coding upstream 82409 17380855 ~ 17381236 (-)
G333652 NA non-coding upstream 85296 17383742 ~ 17384023 (-)
G333653 ccdc191 non-coding upstream 86833 17385279 ~ 17385646 (-)
G333656 NA non-coding upstream 91008 17389454 ~ 17389741 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 54259 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 153690 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 403951 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 413491 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 980459 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 609138 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 610878 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 617638 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 1139068 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1707052 19005498 ~ 19015855 (-)

Expression


Co-expression Network