G333582


Basic Information

Item Value
gene id G333582
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17446185 ~ 17447043 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395063
GCTCAGAGGTTCAAGGTGGTTATGAAGGCAATATTACATACAAGtcattaaagaatatttatatcacattcaaaaATGGAGAGGCAAACTATCTTCACTCGTAAtacactatttgaccatttttgttacCTGGAATAACgaatatctgtttttttgtggtGGAAACCTTTTTACCTGCTTTTACGACAATAAGAAGAGTGAGAGGCTGGCGAGTGAACACATACATACCTAATCCATGTCAGAGCGAGGCGATAAAACCTGCTTACCCAGTGGCGACAAACGAAAGCCTGCGCAAACAGTGTTGAACTGAGAGTAACGCAAAAGGAATGATAATGAGATTTCGATTGAATTCAAAGTCGTCCATGGAAGAAACATAACCACATCATAAATCACATCGTTTGACAGAGGGTGCAAAATTTGTAAAgagaaagcaaataaaaaatgagtgaACTGGAGGAGCCTCGGCGTGGTCTTCTGTTTGTTGACAAAAGTGGCtcctttaaaacatttcattttctaaGAGCCTTTAATGATTAATTCATGATTCGAAATTAAACAAGTGTTGAGTGTGACTGCGTTACAGTTATTCGGTTTCAGATGTTCATGTCAAAGAAGGTGAACAAGTGAAGCAATCCAAGCAGCTGAGGCTTAAAGCTTTTTCTGtggtagtgctgggatttgaactcacaacattCTGGGCATGAGTTCAGAACCTTAACTGCCTTACTATATACATCAGAGACATTACGATGATAATTACTACTGAATTACCATTAATCTTAAAATCCAGTGTGGTGAGGCAGTCAAAAGTCTTAAGTGGTGAGGCAGTCAAAAAGTCTTAACAAACTTTCTTCTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395063 True 859 lncRNA 0.38 1 17446185 17447043

Neighbor

gene id symbol gene type direction distance location
urad urad coding upstream 11360 17432046 ~ 17434825 (+)
ccdc191 ccdc191 coding upstream 55546 17378301 ~ 17390639 (+)
drd3 drd3 coding upstream 92876 17336192 ~ 17353309 (+)
si:ch211-161h7.8 LOC108256135 coding upstream 112676 17329834 ~ 17333509 (+)
fam162a NA coding upstream 130485 17310721 ~ 17315700 (+)
lnx2a lnx2,lnx2a,LOC107716412,LOC107584972,LOC107701681,LOC107591221 coding downstream 3680 17450723 ~ 17466452 (+)
usp12a usp12,usp12a,LOC107705210,LOC107584971,LOC107591222,LOC107654221 coding downstream 36650 17483693 ~ 17492318 (+)
gpr12 gpr12,LOC107701646,LOC107716385,LOC107654195,LOC107705188 coding downstream 49034 17496077 ~ 17503703 (+)
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding downstream 96780 17543823 ~ 17605193 (+)
spice1 spice1 coding downstream 174903 17621946 ~ 17629485 (+)
G333548 NA non-coding upstream 83110 17362871 ~ 17363075 (+)
G333360 NA non-coding upstream 259510 17186129 ~ 17186675 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 548330 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 556024 16888906 ~ 16890161 (+)
G333232 NA non-coding upstream 616206 16732916 ~ 16829979 (+)
G333787 NA non-coding downstream 220593 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 223373 17670416 ~ 17670625 (+)
G333779 usf3 non-coding downstream 260679 17707722 ~ 17712380 (+)
G333795 NA non-coding downstream 294358 17741401 ~ 17756282 (+)
G333797 NA non-coding downstream 309282 17756325 ~ 17756542 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 144181 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 336158 17100164 ~ 17110027 (+)
G332636 NA other upstream 1879522 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 2131217 15134353 ~ 15314968 (+)
rnf6 rnf6,LOC106590444 other downstream 88901 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 314488 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 539719 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 868311 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 1020835 18467878 ~ 18486009 (+)

Expression


Co-expression Network