G333650 (ccdc191)


Basic Information

Item Value
gene id G333650
gene name ccdc191
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17380855 ~ 17381236 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395144
GCTCCATGCTCTTCTTCTCCTGCATCTCTCTGCGTAGACGCACCACTTCCTTCTGCAAAAGCTCCTCCTGTCTCTGAGCTTCCtgtttcctcttcctctgttcCTCGCGCTCCAGCCACTTAGCCTCCTCCAGCGCTTCCCTCTGAGCCTCCTGCTCCCTGCGCTGCCTCTCCCGCTCCGCGTCCCGCTGCGCACGCCGCTCCTTGACCTGCTTGTGTCGTATCTCCATAGTGACGTTCGGATCACGGCCTCTCTTCTTCTCATTGTCCATCCGGAGTTCCTGTACTGTCTCACAATCCATCACGTCTGTCTCCATCAAGTCCTGGAGGAAGTGGCGCACCTCAAAGCTCTCATCTTCAGGCGCAAGCTGGGAATACATATC

Function

symbol description
ccdc191 Is expressed in several structures, including axis; head mesenchyme; mesoderm; musculature system; and pronephric duct. Orthologous to human CCDC191 (coiled-coil domain containing 191).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395144 True 382 lncRNA 0.57 1 17380855 17381236

Neighbor

gene id symbol gene type direction distance location
qtrt2 qtrt2 coding downstream 2848 17364641 ~ 17378007 (-)
kpna1 kpna1,LOC107591240,LOC107754951,LOC107733038 coding downstream 51198 17316520 ~ 17329657 (-)
ccdc58 ccdc58,LOC107733097,LOC107701664 coding downstream 70934 17305155 ~ 17309921 (-)
si:ch211-161h7.5 LOC108256129 coding downstream 99232 17277404 ~ 17281623 (-)
si:ch211-161h7.4 LOC108256371 coding downstream 104727 17266256 ~ 17276128 (-)
zdhhc23b zdhhc23 coding upstream 9419 17390655 ~ 17397944 (-)
gramd1c gramd1c coding upstream 19124 17400360 ~ 17415956 (-)
pdx1 pdx1,LOC107580123 coding upstream 53837 17435073 ~ 17440510 (-)
si:ch211-140b10.6 polr1d coding upstream 65282 17446518 ~ 17450424 (-)
gtf3ab LOC100305039 coding upstream 86522 17467758 ~ 17470677 (-)
G333649 NA non-coding downstream 2283 17378296 ~ 17378572 (-)
G333525 NA non-coding downstream 78859 17285753 ~ 17301996 (-)
G333527 NA non-coding downstream 82409 17293375 ~ 17298446 (-)
G333470 NA non-coding downstream 294651 17085883 ~ 17086204 (-)
G333454 NA non-coding downstream 343343 17037167 ~ 17037512 (-)
G333652 NA non-coding upstream 2506 17383742 ~ 17384023 (-)
G333653 ccdc191 non-coding upstream 4043 17385279 ~ 17385646 (-)
G333656 NA non-coding upstream 8218 17389454 ~ 17389741 (-)
G333657 NA non-coding upstream 8626 17389862 ~ 17390113 (-)
G333700 NA non-coding upstream 160610 17541846 ~ 17542352 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 141739 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 241170 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 491431 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 500971 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 1067939 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 526348 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 528088 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 534848 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 1056278 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1624262 19005498 ~ 19015855 (-)

Expression


Co-expression Network