G333779 (usf3)


Basic Information

Item Value
gene id G333779
gene name usf3
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17707722 ~ 17712380 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395294
CAGGACGGGGTGGTGAAAGAATAGATCCAAATCGGTTATTTAGCGGAGTAGTGCTACTCTTATCAGCACTTGGACTGGTAAATATCTGGTtagaaaaatactgtaaagGAATCTCATTTGGAAGGCTTGGATGAGCAGCAGGTGAATATGAGGGATAGAAAGAAGGGAGAGTGTTCTGAGGCTCTACAGGAAGGAGAGCAGGGGTACGTGAGGCACTGGGCTGCGTGACTGGGGGAATGAAAGATGCATTTGCATTAATCGGAGGTGGAGGGTTCATACCTCCCTCACCAATAAAGGGAAAGCCAAAGTTCTGGGTGAGATGCTGATCTGAAACCAAGTTGCTGTCACTGCCAACCTGCGCACCATCCGGCATAAAACGCACAATACTTCTGCGCCGAGATTCACCACCTGTCTGTGGCCGTCCAAGCAGTACTCCCCCACCTGATGGAAGCGGCAATGGACTTTCAGGCTCAAAAGTGTTTACAGGTCTCAAGTTGCCAGACCTTGGTCTATCTCCTGGGCGGATTTTTGAGCTTTGTGGATCTGGTCCAATATGATGGGCTCTCTGACTGACAGCTGAAAGTGACCTGGAAGAGCCTTGAGCACGGCCTGTATCCGAGCTACTGTGCGGTGTTGATGGAGGATGGGGCAGAACTGATCTTACAGATGAACCATGTAAATTTCCACTAACCTGAGAAATGTGCCCTTTATTGTTGTCCCCAAGATGCATGGGAGGAGCTGTCTGTGTAGGGTGCAAGTTAGGGCTTGAGACTTTAGCCTGAAGTTCCCCAGAAGAAACTCCGGGCAGGCAGTTGTACTCTATACTCACTGGGGGACAGCCTTGTGCAGCCCTCTGGTGTCCAGTTTGTTCGGGAAGATGTGGACCCAATAGACTTTGCATGAAGCTCTGATGACATGAGTCCTGGTCACGTGGCAACCCTGCTCCAGTTTGTAGCCCCTGTGCTGAAGGATGTGTCCCATATGTACCACGACTACGTCCATCACCAGAAGAACCAGCCCCCATTCTAAATCCGGTTTGTGGCTGAGGACCCCTCTGAGCTGTAGCCACAGATTTACTGGTCATATCTCCACTGCGAGACACTTGCACTTCAAAGTTGTTTACTTGAGGCCCATTACCAAGAGTCTTGAAAGGTAAACGCTCCGATATCCGCTGAATGTCTGGAGCCCCCGAGTGTTCTTGGGCTAGTCTGCCTTGAGGATTATGACTAATATTTCCTTTGCCATGTGAGGAGTCGACATAACCTTGTAATTCAGACTGATCCTGTGAATTGCCACGAGCGGTCTGCAATGTATGAAGTCCCATACGTTGGTCACCAGCGGTTGAAGTCTTCCCAATAAGCGCCTCAGCAGAATAACTAGACAGCCGATGACGCTCCTGTCGTGATGGAGTACAAGCAAGGTCTGAAGAGCGAGATACAGGATTACTAGCCTGTGAAGATAGTTGCTGCTCTAAAGTGCGAGAACCCATTAACCTTTGCATAGCTCCATGATCCTGTCCTGGCTGGCGGTCTTGCTGACTCAAATGGTTGTTCTGATGAGCCCTGGGGCCTGCTTGACCCTCACAATTCTTTTCCTGTCTACTAAAGTGTTGTTGTTGCTGAAGTTGTTGCTGAAGATGTTGATGCCTAGAATGTGAACCCGGTTGCTGCatttgttgctgctgttgttgctgctgctgttgaagctgctgtggtttttgttgttggtgttgtggttGCTGCTGATGTTGGTGTTGCTGGgactgttgctgctgctgttggtgttgctgagcttgctgTTGGTGCTGCTGAGACTGCTGTGGTGGTTGATGCTGTACACCATTCTTCTCCAAGTGATGCTGCTTCTGCAAATTAACAGGAGGTCCTGTCTGACCACCTCGCACGACTCTCTTTTTATGGACATTCTGATCTTGTAGCAGAGTCCTCTGTTGAATATTGTGGATCTGGGTGTCGGGTTGTGTAAGGTGATGCTGAAGTTGGTAGAGGTGTCTCTGTtgttcttggtgatgttgaTGTTTGAGATAATGGCTTCCTCCCGTGATCTGTCCAGATTGTGGTGTGCTATGCTGTATGTGTCCCTGTTGTAGGTGCAGCACACTAGGTTGATTTTGTTCATGTGGTGCCAGTTGAGGAGGGCAGTGTCCTTCAGATGGGCGAAGTACAGTGGTCATAAAAGTGTTTCCTGAAAACAGGGCACCTCCTCCATCAGAATGGTTCCCAGTCATAACTGATGAGGAATTTGGGGGCATTTGTCCAGCCATCGCTTGGACATGTTCTGTCCCCTTAACATCTATCCGAGTGATACTACCAGCTGGGCATGGTTTTGAGCGCTTGTTTATGGGAAGAACAAGGTCCTCTTGGGCAGACCTTTTTGGCATATCCTTCTGATGACGTTCAGATATCCCAGCACCTATGTGAGTTCTCATAAGTGCACTTTTCAAAGGTGTATATTCATTAACTTGTGCTGGGCCAGAGCAGCCTTGGGTGACCTGAGATGATGTCTGAGACACTAGAATTGCTGCTCCCCCTGGTGATTGAACAGATACTTGCTGACCAAGGTTTGGAGACCCTGGGTAAGACTGGACAGAGCTTGGCCTGATGAGATTATTAACATTTAGACTAGTGAGTGTACTAGATTGTGTCTGAGAATAAGCTGTGTTCATTTGAAGCCGGACACCAGATGTACTAATGCCAGAAACCTCAACTACTGATGGAGTCTTTGACACTGTTATGTCACCTTGATTTGCCTGCTTTAACTGCTGACTTGTGACCCTTTCTTTAATTATTGGggtttgctgtgtttttggGAGTTCCCATCTAGTGGCAGTTGTACTTGATGGGTTGTCACCACTGCAGCTATCATTCTTCCTTCCTGGGCTGTCTTGTTCAAATATAGCTCTTGCAGCCATTGCTAAGAGTTCTGCCTGCTCAGAGGTGAAACTAAAAGATCCAAATGTATTAGGAGATGCAGTAATATTCTGACCTGTTGGAAGCagtgatgcaacagaaaagccTCTGTTATTTGAAGCTCCTGCTGTTGGTGAATCAGTCTGTCTATTTGCCACTAGTGAGGAATCATATGATTCATTTCCCATTGTTGATACCTCCTGTGAAAGAACAGTTTctttttgcaagaaagaatcTGCTTCAGATATATTCTCTGTTGTAGCACTTGAATGTTCACCTCTTCTGAGTTCTTTGCTTGAATTTGATTGACTAAGTTTGATACTAACAGAATGAATCTGACTAGCAGTTGTCACAGACATATTAACTTCTGAATGTTTAAGAAGCTTGTTGAATGTGTCCAAATTCCTGGATTCCCGGTGTAGAACTGGTGGTGTTGTATCTGATGGATCTGAACAAGTTGATGATGAGGAGTGCAAAGCAAAAGGTGTCTGCATCTGTGAAGTGTCTGCAGCTTTAACTATTGCAGGCTGTGTTTGAACCTGTGGAACCTTCTCTAAGAGGGATCCTGTTTCTAGACTCTTTGTTGGATCAGCACTTGTGCCAGCAGGTATGCTCTGGGGTTGGAGAAGGGCAGTTTCAACAGATGAAACCTTCAAATTATTTTCTGATGAACTGACACTTGTGAGTGTGGTATTGTTCTGAACTAAAGTAGGACTTGATTCTGTTCGTGTGCAACTAGTAGAACAATTGGTGACAGTTGATTTATCTTGAGAAGTAAGTGCACTGGATGAAGAGTTATCATTCATCATTGATTTTGTGGAAGAAGTAACACCTCTGTTCAATGTGCTACACTGTGAAGAGAGAACACTAActgttgattcattttgttGAAGGTCAATATTATTGGTTAAAACAGGTTCACTGCTGGCATGGACTACTGAGCTATCCTCAAGGGGAGTAACAGAATTAAGGGTGCTAACTGTTTTACTGTAAGATGGGGGAGTTGCATCAACACTTTTTCCATGACTTTGAGCTACTTCATTGTCCACCAGAGAAGTGACACTTGTATTTGTTGCCAGATTGGCAGGACTGTGAATTAATTTACTACTTGAACTGACAGAAATGGCTGTAGATGTATTGCATGTTGAAGTAACACTGATGACCACGGGTGTACTTACAGTACTGGTTTTGTGGCTCATATCCTCACTGGCAGAATTCATAAAGTGAATATCTGTTACAGTGGATGAGTGTCCTTGTGCAACATTTGACTGAGATGACGTACTATTTGCTGGCTTTGCAGCAATTCGGCACATGCTTCTCTTCTGATTAGGttcttttctcttcactggTCTGGCCCTTTTAACTGACATCTGTTTGGGTTGGTTTACAGATGCTACACTGGTCTTCTTTGGCAGAATGTTAACTGCACAACTTACTGATGTTGACACGggtacagcagggggtagaacAGTCTCAGTGGATGTACTGACTCCTGAAACTAGCTTGGATAGAGAAGACTGCACTGTAGTGTCTGAAGGTGGAGTAATTTGCAGTTGTACATTGCTCTGATTGGAGACCTGTGAAATGCTTTGACTGGGGATTTGTGAAATGCTCTGGCTAAGGCTAGTGAGGGCACCCAAACAATTCAATGCAACATTGGTGTTAGGTTCCTCACAGGTGGGTTGAATGATTTGCGTAGCATTTTGGCTAACCTGAGAGCTCCCAGTGTCTG

Function

symbol description
usf3 Predicted to enable protein dimerization activity.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU395294 True 4659 lncRNA 0.46 1 17707722 17712380

Neighbor

gene id symbol gene type direction distance location
boc boc coding upstream 1604 17678898 ~ 17706118 (+)
LOC113541191 cfap44 coding upstream 54109 17636383 ~ 17653613 (+)
spice1 spice1 coding upstream 78237 17621946 ~ 17629485 (+)
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding upstream 102529 17543823 ~ 17605193 (+)
gpr12 gpr12,LOC107701646,LOC107716385,LOC107654195,LOC107705188 coding upstream 204019 17496077 ~ 17503703 (+)
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding downstream 15473 17727853 ~ 17739585 (+)
chodl chodl coding downstream 230048 17942428 ~ 17951626 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding downstream 248608 17960988 ~ 17963471 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding downstream 260824 17973204 ~ 17983420 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding downstream 375267 18087647 ~ 18097915 (+)
G333791 NA non-coding upstream 37097 17670416 ~ 17670625 (+)
G333787 NA non-coding upstream 39878 17667636 ~ 17667844 (+)
G333582 NA non-coding upstream 260679 17446185 ~ 17447043 (+)
G333548 NA non-coding upstream 344647 17362871 ~ 17363075 (+)
G333360 NA non-coding upstream 521047 17186129 ~ 17186675 (+)
G333795 NA non-coding downstream 29021 17741401 ~ 17756282 (+)
G333797 NA non-coding downstream 43945 17756325 ~ 17756542 (+)
G333798 NA non-coding downstream 44178 17756558 ~ 17756798 (+)
G333799 NA non-coding downstream 45344 17757724 ~ 17757929 (+)
G333801 LOC108256577,LOC108442200 non-coding downstream 137415 17849795 ~ 17850795 (+)
rnf6 rnf6,LOC106590444 other upstream 165335 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 405718 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 597695 17100164 ~ 17110027 (+)
G332636 NA other upstream 2141059 15566175 ~ 15566663 (+)
si:ch73-173p19.2 LOC108256301 other upstream 2441827 15251635 ~ 15265895 (+)
pan3 pan3,LOC107705213 other downstream 49151 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 274382 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 602974 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 755498 18467878 ~ 18486009 (+)
G334373 NA other downstream 980769 18693149 ~ 18717953 (+)

Expression


Co-expression Network